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View Structure Prediction Details

Protein: gi|54310321, gi|...
Organism: Photobacterium profundum SS9
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54310321, gi|....

Description E-value Query
Range
Subject
Range
gi|28805426, gi|... - gi|28897217|ref|NP_796822.1| ubiquinol-cytochrome c reductase, cytochrome c1 [Vibrio parahaemolyticu...
gi|28805426 - gi|28805426|dbj|BAC58706.1| ubiquinol-cytochrome c reductase, cytochrome c1 [Vibrio parahaemolyticus...
360.0 [0..1] [245..1]

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Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLIVMLLA LLPSVVMAAG GNVHLDAANN DLSDKASLQR GAKTFVNYCF GCHATQYQRY  60
   61 ERVATDLDIP LDLMRDNLIF DKNAKVGDLM TNSISKEYAA VSFGAPAPDL TLVARVRGTD 120
  121 WLYTYLRSFY ADPSRPFGVN NVIFPSVGMP HVLEELQGVP TKVYETRLVD GEEVQEYVGI 180
  181 KSNGAGELNA DEYDEVVRDL VNFLEYSAEP MKLERQRLGL WVMGFIVIFF VLTVLLKKEY 240
  241 WRDVH

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Detection Method: PSI-BLAST
Confidence: 68.522879
Match: 1ezvD
Description: Cytochrome bc1 domain; Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ubiquinol-cytochrome-c reductase activity 3.4564166385356 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 3.4564166385356 bayes_pls_golite062009
electron carrier activity 3.40214573753335 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 3.08381068515965 bayes_pls_golite062009
oxidoreductase activity 2.491960995681 bayes_pls_golite062009
electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity 1.41573374177098 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle