| Protein: | RNC_PHOPR |
| Organism: | Photobacterium profundum SS9 |
| Length: | 224 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNC_PHOPR.
| Description | E-value | Query Range |
Subject Range |
|
|
266.0 | [0..5] | [223..25] |
|
Region A: Residues: [1-224] |
1 11 21 31 41 51
| | | | | |
1 MTSPANRLQR RLGYQFNSSE LMTLSLTHRS ANGKHNERLE FLGDSILSFV IADDLYHRFP 60
61 HVDEGDMSRM RATLVRGKTL AELGREFELG DYLLLGPGEL KSGGFRRDSI LADCVEAIIG 120
121 AIYLDSDTEQ VRKVILSWYQ SRLETIQPGI NQKDPKTRLQ ECLQGRRLAL PAYTVTKVHG 180
181 EAHNQEFTVQ CEVTGLDKPV IGKGSSRRKA EQAAAELALK QLES
|
| Detection Method: |  |
| Confidence: | 55.522879 |
| Match: | 1o0wA |
| Description: | RNase III endonuclease catalytic domain; RNase III, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.103878681691 | bayes_pls_golite062009 |
| endoribonuclease activity | 2.02847548000256 | bayes_pls_golite062009 |
| endonuclease activity | 1.52328576888271 | bayes_pls_golite062009 |
| binding | 1.36306903445995 | bayes_pls_golite062009 |
| nucleic acid binding | 1.33734225890407 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.80785216315429 | bayes_pls_golite062009 |
| catalytic activity | 0.328884095744829 | bayes_pls_golite062009 |
| protein binding | 0.018276859224266 | bayes_pls_golite062009 |
