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View Structure Prediction Details

Protein: PYRH_PHOPR
Organism: Photobacterium profundum SS9
Length: 240 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYRH_PHOPR.

Description E-value Query
Range
Subject
Range
gi|90437851, gi|... - gi|90580973|ref|ZP_01236774.1| uridylate kinase [Vibrio angustum S14], gi|90437851|gb|EAS63041.1| ur...
233.0 [0..1] [240..1]

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Predicted Domain #1
Region A:
Residues: [1-240]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNPKPIYQ RILLKLSGEA LQGSEGFGID AKVLDRMAQE VKELVELGVQ VGLVIGGGNL  60
   61 FRGAGLAEAG MNRVVGDHMG MLATVMNGLA MRDALHRAYV NARVMSAIPL NGVCDSYNWA 120
  121 EAISQLRQGR VVIFAAGTGN PFFTTDSAAC LRGIEIEADI VLKATKVDGV YTDDPVKNPD 180
  181 AVLCDKLGFQ DVLEKELKVM DLAAFTLARD HKMPIRVFNM TKPGSLRRVV MGEQEGTLIS 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.0
Match: 2bneA
Description: The structure of E. coli UMP kinase in complex with UMP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
kinase activity 5.43826659128409 bayes_pls_golite062009
nucleobase, nucleoside, nucleotide kinase activity 4.76215533422168 bayes_pls_golite062009
nucleotide kinase activity 4.36245911991838 bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor 4.17538459617947 bayes_pls_golite062009
uridylate kinase activity 3.54453921304057 bayes_pls_golite062009
catalytic activity 3.20382750184555 bayes_pls_golite062009
transferase activity 2.54481238004476 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.89315414622708 bayes_pls_golite062009
phosphotransferase activity, carboxyl group as acceptor 1.02979719559565 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle