YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54309642, gi\|...
Organism:	Photobacterium profundum SS9
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54309642, gi|....

Description	E-value	Query Range	Subject Range
gi\|28806008 - gi\|28806008\|dbj\|BAC59284.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28897795, gi\|... - gi\|28897795\|ref\|NP_797400.1\| hypothetical protein VP1021 [Vibrio parahaemolyticus RIMD 2210633], gi\|...	138.0	[0..1]	[81..1]
gi\|90326919, gi\|... - gi\|90412195\|ref\|ZP_01220201.1\| hypothetical protein P3TCK_27899 [Photobacterium profundum 3TCK], gi\|...	137.0	[0..1]	[82..1]
gi\|15641735, gi\|... - gi\|9656252\|gb\|AAF94881.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11354641 - pir\|\|C82163 conserved hypothetical protein VC1731 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|121585842, gi... - gi\|121585842\|ref\|ZP_01675636.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215499... gi\|124116865, gi... - gi\|153212069\|ref\|ZP_01947886.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124116865\|... gi\|153223328, gi... - gi\|153223328\|ref\|ZP_01953801.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241182... gi\|153802167, gi... - gi\|153802167\|ref\|ZP_01956753.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124122302... gi\|153819059, gi... - gi\|153819059\|ref\|ZP_01971726.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|153822784, gi... - gi\|229511600\|ref\|ZP_04401079.1\| protein YciN [Vibrio cholerae B33], gi\|229351565\|gb\|EEO16506.1\| prot... gi\|254848848, gi... - gi\|75831064\|ref\|ZP_00760332.1\| hypothetical protein VchoM_01001009 [Vibrio cholerae MO10], gi\|254848... gi\|125622564, gi... - gi\|75819311\|ref\|ZP_00749397.1\| hypothetical protein VchoV5_01001749 [Vibrio cholerae V51], gi\|254224... gi\|229370391, gi... - gi\|229607736\|ref\|YP_002878384.1\| protein YciN [Vibrio cholerae MJ-1236], gi\|229370391\|gb\|ACQ60814.1\|... gi\|229529242, gi... - gi\|229529242\|ref\|ZP_04418632.1\| protein YciN [Vibrio cholerae 12129(1)], gi\|229333016\|gb\|EEN98502.1\|... gi\|229518739, gi... - gi\|229518739\|ref\|ZP_04408182.1\| protein YciN [Vibrio cholerae RC9], gi\|229343428\|gb\|EEO08403.1\| prot... gi\|229347828, gi... - gi\|229515123\|ref\|ZP_04404583.1\| protein YciN [Vibrio cholerae TMA 21], gi\|229347828\|gb\|EEO12787.1\| p... gi\|229355666, gi... - gi\|229508161\|ref\|ZP_04397666.1\| protein YciN [Vibrio cholerae BX 330286], gi\|229355666\|gb\|EEO20587.1... gi\|227081879, gi... - gi\|227081879\|ref\|YP_002810430.1\| hypothetical protein VCM66_1671 [Vibrio cholerae M66-2], gi\|2270097...	136.0	[0..1]	[81..1]
gi\|148876512, gi... - gi\|153827931\|ref\|ZP_01980598.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887651... gi\|229523820, gi... - gi\|229523820\|ref\|ZP_04413225.1\| protein YciN [Vibrio cholerae bv. albensis VL426], gi\|229337401\|gb\|E... gi\|229342224, gi... - gi\|229520669\|ref\|ZP_04410092.1\| protein YciN [Vibrio cholerae TM 11079-80], gi\|229342224\|gb\|EEO07219... tr\|D7H9K7\|D7H9K7... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_01259 PE=4 SV=1 gi\|254223375, gi... - gi\|75822432\|ref\|ZP_00752059.1\| hypothetical protein VchoR_01002349 [Vibrio cholerae RC385], gi\|25422...	135.0	[0..1]	[81..1]
gi\|227118184, gi... - gi\|75827081\|ref\|ZP_00756516.1\| hypothetical protein VchoO_01001241 [Vibrio cholerae O395], gi\|227118... gi\|197753171, gi... - gi\|254285324\|ref\|ZP_04960289.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197753... gi\|153826252, gi... - gi\|153826252\|ref\|ZP_01978919.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149740017... gi\|121727934, gi... - gi\|75815601\|ref\|ZP_00746101.1\| hypothetical protein VchoV_01001724 [Vibrio cholerae V52], gi\|1217279...	134.0	[0..1]	[81..1]
gi\|27365460, gi\|... - gi\|27365460\|ref\|NP_760988.1\| hypothetical protein VV1_2128 [Vibrio vulnificus CMCP6], gi\|27361608\|gb... gi\|37199248, gi\|... - gi\|37680500\|ref\|NP_935109.1\| hypothetical protein VV2316 [Vibrio vulnificus YJ016], gi\|37199248\|dbj\|...	134.0	[0..1]	[80..1]
lcl\|NC_016856.1_... - [gene=yciN] [protein=hypothetical protein] [protein_id=YP_005237641.1] [location=1823481..1823732] gi\|238911893 - gi\|238911893\|ref\|ZP_04655730.1\| hypothetical protein SentesTe_12276 [Salmonella enterica subsp. ente... gi\|25512457, gi\|... - gi\|25512457\|pir\|\|AE0654 conserved hypothetical protein STY1335 [imported] - Salmonella enterica subs... gi\|16765059, gi\|... - gi\|16765059\|ref\|NP_460674.1\| hypothetical protein STM1715 [Salmonella typhimurium LT2], gi\|16420245\|... gi\|29137693, gi\|... - gi\|29142064\|ref\|NP_805406.1\| hypothetical protein t1628 [Salmonella enterica subsp. enterica serovar... gi\|62180282, gi\|... - gi\|62180282\|ref\|YP_216699.1\| hypothetical protein SC1712 [Salmonella enterica subsp. enterica serova... gi\|16760165 - gi\|16760165\|ref\|NP_455782.1\| hypothetical protein STY1335 [Salmonella enterica subsp. enterica serov... gi\|194735847, gi... - gi\|194735847\|ref\|YP_002114747.1\| protein YciN [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|197211978, gi... - gi\|197248275\|ref\|YP_002146311.1\| protein YciN [Salmonella enterica subsp. enterica serovar Agona str... gi\|197263856, gi... - gi\|197263856\|ref\|ZP_03163930.1\| protein YciN [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197937518, gi... - gi\|198243002\|ref\|YP_002215426.1\| protein YciN [Salmonella enterica subsp. enterica serovar Dublin st... gi\|205343886, gi... - gi\|205343886\|gb\|EDZ30650.1\| protein YciN [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|194446404, gi... - gi\|194446404\|ref\|YP_002040969.1\| protein YciN [Salmonella enterica subsp. enterica serovar Newport s... gi\|194449605, gi... - gi\|194449605\|ref\|YP_002045762.1\| hypothetical protein SeHA_C1905 [Salmonella enterica subsp. enteric... gi\|194472676, gi... - gi\|194472676\|ref\|ZP_03078660.1\| protein YciN [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|168237767, gi... - gi\|197289237\|gb\|EDY28604.1\| protein YciN [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|168241293, gi... - gi\|205339113\|gb\|EDZ25877.1\| protein YciN [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|168260064, gi... - gi\|205350907\|gb\|EDZ37538.1\| protein YciN [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|168462811, gi... - gi\|195634103\|gb\|EDX52455.1\| protein YciN [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|161363160, gi... - gi\|161613796\|ref\|YP_001587761.1\| hypothetical protein SPAB_01530 [Salmonella enterica subsp. enteric... gi\|167549777, gi... - gi\|205324978\|gb\|EDZ12817.1\| protein YciN [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|205328238, gi... - gi\|205328238\|gb\|EDZ15002.1\| protein YciN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|205335510, gi... - gi\|205335510\|gb\|EDZ22274.1\| protein YciN [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|224468320, gi... - gi\|224583793\|ref\|YP_002637591.1\| hypothetical protein SPC_2014 [Salmonella enterica subsp. enterica ... gi\|213647993 - gi\|213647993\|ref\|ZP_03378046.1\| hypothetical protein SentesTy_12329 [Salmonella enterica subsp. ente... gi\|213855229 - gi\|213855229\|ref\|ZP_03383469.1\| hypothetical protein SentesT_14617 [Salmonella enterica subsp. enter... gi\|213980310 - gi\|213980310\|ref\|ZP_03407569.1\| hypothetical protein Salmonellaentericaenterica_39945 [Salmonella en... gi\|214002709 - gi\|214002709\|ref\|ZP_03413444.1\| hypothetical protein Salmonellentericaenterica_21254 [Salmonella ent... gi\|213423757 - gi\|213423757\|ref\|ZP_03356737.1\| hypothetical protein Salmonentericaenterica_40503 [Salmonella enteri... gi\|213424432 - gi\|213424432\|ref\|ZP_03357245.1\| hypothetical protein SentesTyphi_01455 [Salmonella enterica subsp. e... gi\|213582176 - gi\|213582176\|ref\|ZP_03364002.1\| hypothetical protein SentesTyph_13629 [Salmonella enterica subsp. en... gi\|213609446 - gi\|213609446\|ref\|ZP_03369272.1\| hypothetical protein SentesTyp_02488 [Salmonella enterica subsp. ent... gi\|200390154, gi... - gi\|200390154\|ref\|ZP_03216765.1\| protein YciN [Salmonella enterica subsp. enterica serovar Virchow st... gi\|204322931, gi... - gi\|204927589\|ref\|ZP_03218790.1\| protein YciN [Salmonella enterica subsp. enterica serovar Javiana st... gi\|205352611, gi... - gi\|205352611\|ref\|YP_002226412.1\| hypothetical protein SG1399 [Salmonella enterica subsp. enterica se... gi\|207856772, gi... - gi\|207856772\|ref\|YP_002243423.1\| hypothetical protein SEN1318 [Salmonella enterica subsp. enterica s...	133.0	[0..3]	[82..4]
gi\|91228212, gi\|... - gi\|91228212\|ref\|ZP_01262194.1\| hypothetical protein V12G01_20693 [Vibrio alginolyticus 12G01], gi\|91...	133.0	[0..1]	[81..1]
gi\|197362283, gi... - gi\|197362283\|ref\|YP_002141920.1\| hypothetical protein SSPA1080 [Salmonella enterica subsp. enterica ... gi\|56413359, gi\|... - gi\|56413359\|ref\|YP_150434.1\| hypothetical protein SPA1161 [Salmonella enterica subsp. enterica serov...	132.0	[0..3]	[82..4]
YCIN_ECOLI - Protein yciN - Escherichia coli gi\|194425949, gi... - gi\|75212710\|ref\|ZP_00712708.1\| hypothetical protein EcolB_01000089 [Escherichia coli B171], gi\|19442... gi\|218365028, gi... - gi\|218558259\|ref\|YP_002391172.1\| hypothetical protein ECS88_1409 [Escherichia coli S88], gi\|21836502... gi\|191166657, gi... - gi\|75230171\|ref\|ZP_00716672.1\| hypothetical protein EcolB7_01001578 [Escherichia coli B7A], gi\|19116... gi\|218689263, gi... - gi\|218689263\|ref\|YP_002397475.1\| hypothetical protein ECED1_1479 [Escherichia coli ED1a], gi\|2184268... gi\|191171098, gi... - gi\|75242072\|ref\|ZP_00725866.1\| hypothetical protein EcolF_01001015 [Escherichia coli F11], gi\|191171... gi\|218351576, gi... - gi\|218694844\|ref\|YP_002402511.1\| hypothetical protein EC55989_1430 [Escherichia coli 55989], gi\|2183... gi\|192931849, gi... - gi\|75259383\|ref\|ZP_00730702.1\| hypothetical protein EcolE2_01000814 [Escherichia coli E22], gi\|19306... gi\|218699983, gi... - gi\|218699983\|ref\|YP_002407612.1\| hypothetical protein ECIAI39_1612 [Escherichia coli IAI39], gi\|2183... gi\|188492938, gi... - gi\|75515115\|ref\|ZP_00737319.1\| hypothetical protein Ecol5_01001129 [Escherichia coli 53638], gi\|1884... gi\|218431893, gi... - gi\|218704796\|ref\|YP_002412315.1\| hypothetical protein ECUMN_1571 [Escherichia coli UMN026], gi\|21843... gi\|81240780, gi\|... - gi\|82776632\|ref\|YP_402981.1\| hypothetical protein SDY_1343 [Shigella dysenteriae Sd197], gi\|81240780... gi\|82544273, gi\|... - gi\|82544273\|ref\|YP_408220.1\| hypothetical protein SBO_1793 [Shigella boydii Sb227], gi\|81245684\|gb\|A... gi\|208811150, gi... - gi\|208811150\|ref\|ZP_03252983.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208732972, gi... - gi\|208816324\|ref\|ZP_03257503.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208738499, gi... - gi\|208818376\|ref\|ZP_03258696.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209159451, gi... - gi\|209398051\|ref\|YP_002270327.1\| hypothetical protein ECH74115_1905 [Escherichia coli O157:H7 str. E... gi\|194424033, gi... - gi\|83587410\|ref\|ZP_00926038.1\| hypothetical protein Ecol1_01001403 [Escherichia coli 101-1], gi\|1944... gi\|209918512, gi... - gi\|209918512\|ref\|YP_002292596.1\| hypothetical protein ECSE_1321 [Escherichia coli SE11], gi\|20991177... gi\|75179083, gi\|... - gi\|75179083\|ref\|ZP_00699101.1\| hypothetical protein SboyB_01000877 [Shigella boydii BS512], gi\|18773... gi\|215264640, gi... - gi\|215486568\|ref\|YP_002328999.1\| hypothetical protein E2348C_1463 [Escherichia coli O127:H6 str. E23... gi\|157076975, gi... - gi\|75190357\|ref\|ZP_00703624.1\| hypothetical protein EcolE_01003658 [Escherichia coli E24377A], gi\|15... gi\|217317889, gi... - gi\|217329450\|ref\|ZP_03445530.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|157160778, gi... - gi\|75195421\|ref\|ZP_00705491.1\| hypothetical protein EcolH_01001214 [Escherichia coli HS], gi\|1571607... gi\|218360593, gi... - gi\|218553825\|ref\|YP_002386738.1\| hypothetical protein ECIAI1_1292 [Escherichia coli IAI1], gi\|218360... gi\|254592261, gi... - gi\|254792861\|ref\|YP_003077698.1\| hypothetical protein ECSP_1791 [Escherichia coli O157:H7 str. TW143... gi\|189370399, gi... - gi\|189370399\|gb\|EDU88815.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189376275, gi... - gi\|189376275\|gb\|EDU94691.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|170020363, gi... - gi\|170020363\|ref\|YP_001725317.1\| hypothetical protein EcolC_2355 [Escherichia coli ATCC 8739], gi\|16... gi\|169888785, gi... - gi\|170080950\|ref\|YP_001730270.1\| hypothetical protein ECDH10B_1388 [Escherichia coli str. K-12 subst... gi\|170519643, gi... - gi\|170681925\|ref\|YP_001743912.1\| hypothetical protein EcSMS35_1858 [Escherichia coli SMS-3-5], gi\|17... gi\|170123028, gi... - gi\|170768262\|ref\|ZP_02902715.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... gi\|194416716, gi... - gi\|194435059\|ref\|ZP_03067298.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|195939208 - gi\|195939208\|ref\|ZP_03084590.1\| hypothetical protein EscherichcoliO157_22776 [Escherichia coli O157:... gi\|158273538, gi... - gi\|159481520\|ref\|XP_001698827.1\| hypothetical protein CHLREDRAFT_106211 [Chlamydomonas reinhardtii],... YCIN_ECOL6 - Protein yciN OS=Escherichia coli O6 GN=yciN PE=4 SV=1 gi\|188014779, gi... - gi\|188014779\|gb\|EDU52901.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168758358, gi... - gi\|189354833\|gb\|EDU73252.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168763579, gi... - gi\|189366259\|gb\|EDU84675.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168771272, gi... - gi\|189359943\|gb\|EDU78362.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168775082, gi... - gi\|187769326\|gb\|EDU33170.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168783776, gi... - gi\|188998927\|gb\|EDU67913.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|117623533, gi... - gi\|117623533\|ref\|YP_852446.1\| hypothetical protein APECO1_433 [Escherichia coli APEC O1], gi\|1155126... gi\|124528348, gi... - gi\|124528348\|ref\|ZP_01699658.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500580\|gb... EG12868 - DUF2498 protein YciN / DUF2498 family protein YCIN_SHIFL - Protein YciN OS=Shigella flexneri GN=yciN PE=1 SV=1 YCIN_ECOL6 - Protein YciN OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yciN PE=4 SV=1 gi\|13361310, gi\|... - gi\|15831099\|ref\|NP_309872.1\| hypothetical protein ECs1845 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|24051585, gi\|... - gi\|24112670\|ref\|NP_707180.1\| hypothetical protein SF1275 [Shigella flexneri 2a str. 301], gi\|2405158... gi\|110343097, gi... - gi\|110641505\|ref\|YP_669235.1\| hypothetical protein ECP_1323 [Escherichia coli 536], gi\|110343097\|gb\|... YCIN_ECO57 - Protein YciN OS=Escherichia coli O157:H7 GN=yciN PE=4 SV=1 gi\|227836502, gi... - gi\|227886298\|ref\|ZP_04004103.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783650... gi\|30041043, gi\|... - gi\|30062795\|ref\|NP_836966.1\| hypothetical protein S1360 [Shigella flexneri 2a str. 2457T], gi\|300410... gi\|237705297, gi... - gi\|237705297\|ref\|ZP_04535778.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|15801906, gi\|... - gi\|15801906\|ref\|NP_287926.1\| hypothetical protein Z2537 [Escherichia coli O157:H7 EDL933], gi\|125155... gi\|238900506, gi... - gi\|238900506\|ref\|YP_002926302.1\| hypothetical protein BWG_1102 [Escherichia coli BW2952], gi\|2388628... EG12868 - DUF2498 protein YciN / DUF2498 family protein gi\|251784778, gi... - gi\|251784778\|ref\|YP_002999082.1\| hypothetical protein B21_01259 [Escherichia coli BL21], gi\|24237705... gi\|89108119, gi\|... - gi\|89108119\|ref\|AP_001899.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|174... gi\|253324774, gi... - gi\|254288161\|ref\|YP_003053909.1\| hypothetical protein ECD_01249 [Escherichia coli BL21(DE3)], gi\|253... gi\|91072138, gi\|... - gi\|91210564\|ref\|YP_540550.1\| hypothetical protein UTI89_C1541 [Escherichia coli UTI89], gi\|91072138\|... gi\|253973254, gi... - gi\|254161353\|ref\|YP_003044461.1\| hypothetical protein ECB_01249 [Escherichia coli B str. REL606], gi...	132.0	[0..3]	[82..4]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKKSIPQD SLLLIANQLI QDHDAYITGM RATSVEEKSD VLVFKGEYFL DDNGLPTTNT  60
   61 TAVFNMFKYL AHKLSPEFTL QD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.905	d.52.9	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits