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View Structure Prediction Details

Protein: gi|46913983, gi|...
Organism: Photobacterium profundum SS9
Length: 284 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46913983, gi|....

Description E-value Query
Range
Subject
Range
gi|90413116, gi|... - gi|90413116|ref|ZP_01221113.1| hypothetical protein P3TCK_00775 [Photobacterium profundum 3TCK], gi|...
245.0 [0..1] [283..1]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFELKKMISA LLMPLPAMLI LGFIGLLILW FTRRKGLASG FIAFAFLGIF MVSFQPIATS  60
   61 LLRPLETENQ 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-284]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFVPSSTPVD YIMVLGSGHV IDKAMPITSE LSRAALMRLS EGMRIYRLFP GSKLILSGYG  60
   61 GGSDISQARM MAKVALALGV NKSDILLLET ARDTWEEAFQ AASVVGDKNM VLVTSASHMT 120
  121 RALYEFNQAG LTPTPAPTNF LASNKIKQPW DRYAPKAKYL EQTERYWHET MGQIWQRIRD 180
  181 TAANVEKDKV NKSNKNADIN PVEILDENDS TATP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 42.161151
Match: PF02698.8
Description: No description for PF02698.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle