YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|46913864, gi|...
Organism: Photobacterium profundum SS9
Length: 199 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46913864, gi|....

Description E-value Query
Range
Subject
Range
gi|90413691, gi|... - gi|90413691|ref|ZP_01221680.1| ureidoglycolate hydrolase [Photobacterium profundum 3TCK], gi|9032531...
267.0 [0..1] [199..1]

Back

Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQNIIDQS IEAQSKEASA TVTETLLLNK TLKIEPLTPE AFKPFGDLID KDNSEFFMIN  60
   61 NGSTRRYHRM ADVDVADNGG EPIISIFQAT PLQYPLSIKM MERHPLGSQA FVPLLGNPYL 120
  121 ILVAPKDDSP NPDAIRAFIS NGKQGVNYHK GVWHHPVLVL KEEDQFLVVD RAGPGNNCDE 180
  181 VYFSDKVQVE LTLDDLVSI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.154902
Match: 2bdrA
Description: Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ureidoglycolate hydrolase activity 2.63080015873229 bayes_pls_golite062009
catalytic activity 0.401988496917198 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle