YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54309369, gi\|...
Organism:	Photobacterium profundum SS9
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54309369, gi|....

Description	E-value	Query Range	Subject Range
gi\|149366578, gi... - gi\|149366578\|ref\|ZP_01888612.1\| putative sulfite reductase subunit protein [Yersinia pestis CA88-412... gi\|145598811, gi... - gi\|145598811\|ref\|YP_001162887.1\| sulfite reductase subunit protein [Yersinia pestis Pestoides F], gi... gi\|89103143, gi\|... - gi\|89103143\|ref\|ZP_01175734.1\| COG2920: Dissimilatory sulfite reductase (desulfoviridin), gamma subu... gi\|167424022, gi... - gi\|167424022\|ref\|ZP_02315775.1\| sulfurtransferase TusE [Yersinia pestis biovar Mediaevalis str. K197... gi\|108778649, gi... - gi\|108806736\|ref\|YP_650652.1\| putative sulfite reductase subunit protein [Yersinia pestis Antiqua], ... gi\|166962322, gi... - gi\|167419581\|ref\|ZP_02311334.1\| sulfurtransferase TusE [Yersinia pestis biovar Orientalis str. MG05-... gi\|229903088, gi... - gi\|229903088\|ref\|ZP_04518203.1\| sulfur transfer protein [Yersinia pestis Nepal516], gi\|229679868\|gb\|... gi\|170024843, gi... - gi\|170024843\|ref\|YP_001721348.1\| TusE/DsrC/DsvC family sulfur relay protein [Yersinia pseudotubercul... gi\|167467229 - gi\|167467229\|ref\|ZP_02331933.1\| sulfurtransferase TusE [Yersinia pestis FV-1] gi\|229697790, gi... - gi\|229841424\|ref\|ZP_04461583.1\| sulfur transfer protein [Yersinia pestis biovar Orientalis str. PEXU... gi\|21959609, gi\|... - gi\|22126601\|ref\|NP_670024.1\| sulfite reductase [Yersinia pestis KIM], gi\|21959609\|gb\|AAM86275.1\|AE01... gi\|229843534, gi... - gi\|229843534\|ref\|ZP_04463677.1\| sulfur transfer protein [Yersinia pestis biovar Orientalis str. Indi... gi\|45436025, gi\|... - gi\|45441165\|ref\|NP_992704.1\| putative sulfite reductase [Yersinia pestis biovar Microtus str. 91001]... gi\|186894888, gi... - gi\|186894888\|ref\|YP_001872000.1\| TusE/DsrC/DsvC family sulfur relay protein [Yersinia pseudotubercul... gi\|229703763, gi... - gi\|229894365\|ref\|ZP_04509548.1\| sulfur transfer protein [Yersinia pestis Pestoides A], gi\|229703763\|... gi\|153948047, gi... - gi\|77628694\|ref\|ZP_00791280.1\| COG2920: Dissimilatory sulfite reductase (desulfoviridin), gamma subu... TUSE_YERPE - Sulfurtransferase TusE OS=Yersinia pestis GN=tusE PE=3 SV=2 gi\|166011957, gi... - gi\|166011957\|ref\|ZP_02232855.1\| sulfurtransferase TusE [Yersinia pestis biovar Antiqua str. E1979001... gi\|165924372, gi... - gi\|165924372\|ref\|ZP_02220204.1\| sulfurtransferase TusE [Yersinia pestis biovar Orientalis str. F1991... gi\|167048292, gi... - gi\|167402326\|ref\|ZP_02307794.1\| sulfurtransferase TusE [Yersinia pestis biovar Antiqua str. UG05-045... gi\|166211328, gi... - gi\|166211328\|ref\|ZP_02237363.1\| sulfurtransferase TusE [Yersinia pestis biovar Antiqua str. B4200300...	197.0	[0..20]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHRVRITIL SAIRISRRIM LEINGKQIET DAQGYLKNVD DWSRDIVPLL AQDEGIELSE  60
   61 AHWEVILFVR EFYLEFNTSP AIRMLVKAMA KKYGEEKGSS RYLYKLFIKG PAKQATKLAG 120
  121 LPKPVKCI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.221849
Match:	1yx3A
Description:	NMR structure of Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits