YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46913131, gi\|...
Organism:	Photobacterium profundum SS9
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46913131, gi|....

Description	E-value	Query Range	Subject Range
gi\|51590424, gi\|... - gi\|51597142\|ref\|YP_071333.1\| hypothetical protein YPTB2826 [Yersinia pseudotuberculosis IP 32953], g... gi\|186699261, gi... - gi\|186896235\|ref\|YP_001873347.1\| hypothetical protein YPTS_2933 [Yersinia pseudotuberculosis PB1/+],... gi\|170023556, gi... - gi\|170023556\|ref\|YP_001720061.1\| hypothetical protein YPK_1310 [Yersinia pseudotuberculosis YPIII], ... Q668B4\|Q668B4_YERPS - Putative membrane protein precursor - Yersinia pseudotuberculosis	274.0	[0..12]	[238..90]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNHCLYVV SESDVVELAE INKIDYIDVL RTTSGYVAAS LDSNILRKLV KDLGFTGRAY  60
   61 EKMVNGKKYV IFKGKPGQRK IFTGTRYLST NAKVVDMIVG QRGIKTSAIQ GARLTIFLTV 120
  121 PLIVLQHVLK DRFLLNDLVA DLSVSLIKIG ISSIVGAIFA TGVGAITTIA AAPVALAIVV 180
  181 GLAASYALDR LDKEYRITEK LAKLLEDKAM KQSMKTAWEV EDKLRWQIAN SQAVGKGIYY 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits