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View Structure Prediction Details

Protein: gi|54308620, gi|...
Organism: Photobacterium profundum SS9
Length: 108 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54308620, gi|....

Description E-value Query
Range
Subject
Range
gi|49531025, gi|... - gi|50085049|ref|YP_046559.1| putative nitrate reductase (electron transfer subunit) and putative nit...
116.0 [0..2] [107..13]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQWISVCAI DDLMPGTGVC ALVEGEQVAI FRPYASEELF AIDNMDPFAR SNVLSRGLIC  60
   61 EHDGELWVAS PLKKQRFALK DGRCLENADV SVKSYQIQVE NGDVQVAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.045757
Match: 2jo6A
Description: No description for 2jo6A was found.

Predicted functions:

Term Confidence Notes
ubiquinol-cytochrome-c reductase activity 4.14993304522786 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 4.14993304522786 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 3.9271223895757 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.76503174823869 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 3.73915691834026 bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors 3.30005888638622 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.96070332606483 bayes_pls_golite062009
cation transmembrane transporter activity 2.63750663816019 bayes_pls_golite062009
ion transmembrane transporter activity 2.33992572389215 bayes_pls_golite062009
electron carrier activity 2.2277730493777 bayes_pls_golite062009
oxidoreductase activity 1.79992184100284 bayes_pls_golite062009
catalytic activity 0.746741393172769 bayes_pls_golite062009
iron-sulfur cluster binding 0.189086586993314 bayes_pls_golite062009
metal cluster binding 0.189086586993314 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle