YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54308229, gi\|...
Organism:	Photobacterium profundum SS9
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54308229, gi|....

Description	E-value	Query Range	Subject Range
gi\|146317300, gi... - gi\|75827406\|ref\|ZP_00756841.1\| COG0716: Flavodoxins [Vibrio cholerae O395], gi\|227118546\|ref\|YP_0028... gi\|90074876 - gi\|90074876\|dbj\|BAE87115.1\| flavodoxin 1 [Vibrio cholerae bv. albensis] gi\|15642099, gi\|... - gi\|9656648\|gb\|AAF95245.1\| flavodoxin 1 [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15642099\|r... gi\|11250201 - pir\|\|A82120 flavodoxin [similarity] - Vibrio cholerae (strain N16961 serogroup O1) gi\|153831270, gi... - gi\|153831270\|ref\|ZP_01983937.1\| flavodoxin 1 [Vibrio cholerae 623-39], gi\|148873250\|gb\|EDL71385.1\| f... gi\|227082225, gi... - gi\|227082225\|ref\|YP_002810776.1\| flavodoxin 1 [Vibrio cholerae M66-2], gi\|227010113\|gb\|ACP06325.1\| f... gi\|229355317, gi... - gi\|229507812\|ref\|ZP_04397317.1\| flavodoxin 1 [Vibrio cholerae BX 330286], gi\|229355317\|gb\|EEO20238.1... gi\|229511951, gi... - gi\|229511951\|ref\|ZP_04401430.1\| flavodoxin 1 [Vibrio cholerae B33], gi\|229351916\|gb\|EEO16857.1\| flav... gi\|254844891, gi... - gi\|254849186\|ref\|ZP_05238536.1\| flavodoxin FldA [Vibrio cholerae MO10], gi\|254844891\|gb\|EET23305.1\| ... gi\|229348935, gi... - gi\|229513754\|ref\|ZP_04403216.1\| flavodoxin 1 [Vibrio cholerae TMA 21], gi\|229348935\|gb\|EEO13892.1\| f... gi\|229519087, gi... - gi\|229519087\|ref\|ZP_04408530.1\| flavodoxin 1 [Vibrio cholerae RC9], gi\|229343776\|gb\|EEO08751.1\| flav... gi\|229522056, gi... - gi\|229522056\|ref\|ZP_04411473.1\| flavodoxin 1 [Vibrio cholerae TM 11079-80], gi\|229340981\|gb\|EEO05986... gi\|229524105, gi... - gi\|229524105\|ref\|ZP_04413510.1\| flavodoxin 1 [Vibrio cholerae bv. albensis VL426], gi\|229337686\|gb\|E... gi\|229332659, gi... - gi\|229528885\|ref\|ZP_04418275.1\| flavodoxin 1 [Vibrio cholerae 12129(1)], gi\|229332659\|gb\|EEN98145.1\|... gi\|229607357, gi... - gi\|229607357\|ref\|YP_002878005.1\| flavodoxin 1 [Vibrio cholerae MJ-1236], gi\|229370012\|gb\|ACQ60435.1\|...	185.0	[0..1]	[175..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVGLFFGS DTGNTEAVAK MIQKQLGKNL VEVKDIAKSS KEDIDNFDLL LLGIPTWYYG  60
   61 EAQCDWDDFF PELENIDFST KLVAIFGCGD QEDYAEYFCD AMGTVRDIIE GRGATIVGHF 120
  121 STEGFEFEAS KALVDDNNFV GLCVDEDRQP ELTDERVAKW VKQIFEEMCL AELAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1ag9A
Description:	Flavodoxin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.0467816962267	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	1.85486974695416	bayes_pls_golite062009
binding	0.681337940863521	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	0.650874844500866	bayes_pls_golite062009
catalytic activity	0.275631658558537	bayes_pls_golite062009
coenzyme binding	0.265571968246766	bayes_pls_golite062009
protein binding	0.251879151875848	bayes_pls_golite062009
FMN binding	0.056297096581433	bayes_pls_golite062009
cofactor binding	0.0451815885965905	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: