YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54308203, gi\|...
Organism:	Photobacterium profundum SS9
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54308203, gi|....

Description	E-value	Query Range	Subject Range
gi\|229343542, gi... - gi\|229518853\|ref\|ZP_04408296.1\| primosomal replication protein N prime prime [Vibrio cholerae RC9], ... gi\|229607607, gi... - gi\|229607607\|ref\|YP_002878255.1\| primosomal replication protein N prime prime [Vibrio cholerae MJ-12... gi\|254848943, gi... - gi\|75830410\|ref\|ZP_00759689.1\| COG3923: Primosomal replication protein N'' [Vibrio cholerae MO10], g... gi\|15641859, gi\|... - gi\|9656386\|gb\|AAF95005.1\| primosomal replication protein N`` [Vibrio cholerae O1 biovar El Tor str. ... gi\|229351680, gi... - gi\|229511715\|ref\|ZP_04401194.1\| primosomal replication protein N prime prime [Vibrio cholerae B33], ... gi\|11355819 - pir\|\|D82148 primosomal replication factor N VC1857 [similarity] - Vibrio cholerae (strain N16961 ser...	206.0	[0..1]	[181..6]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLSRLEAI VDQLLHEAIQ IDRQRKEAKY PLFDEQLFHC RSKLLTPCVK EIQHEISALR  60
   61 KERQAGKLLA SRTQYICESI VAQIQAVQRE IATQNIRKNE PRKKAGWRKP INELRQDLAK 120
  121 HKEWESRLAA MVRDKEMQLS RSATFAEQQS MQKEVLALEG RLTRCRSSLA NIEKSINYSE 180
  181 RGR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.72
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits