YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54308122, gi\|...
Organism:	Photobacterium profundum SS9
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54308122, gi|....

Description	E-value	Query Range	Subject Range
gi\|229369988, gi... - gi\|229607333\|ref\|YP_002877981.1\| flagellar biosynthesis protein FliL [Vibrio cholerae MJ-1236], gi\|2... gi\|229337710, gi... - gi\|229524129\|ref\|ZP_04413534.1\| flagellar biosynthesis protein FliL [Vibrio cholerae bv. albensis VL... gi\|229341005, gi... - gi\|229522080\|ref\|ZP_04411497.1\| flagellar biosynthesis protein FliL [Vibrio cholerae TM 11079-80], g... gi\|229519111, gi... - gi\|229519111\|ref\|ZP_04408554.1\| flagellar biosynthesis protein FliL [Vibrio cholerae RC9], gi\|229343... gi\|124118087, gi... - gi\|153223621\|ref\|ZP_01953975.1\| flagellar protein FliL, putative [Vibrio cholerae MAK 757], gi\|12411... gi\|229355293, gi... - gi\|229507788\|ref\|ZP_04397293.1\| flagellar biosynthesis protein FliL [Vibrio cholerae BX 330286], gi\|... gi\|153803036, gi... - gi\|153803036\|ref\|ZP_01957622.1\| flagellar protein FliL, putative [Vibrio cholerae MZO-3], gi\|1241214... gi\|227010140, gi... - gi\|227082252\|ref\|YP_002810803.1\| putative flagellar protein FliL [Vibrio cholerae M66-2], gi\|2270101... gi\|126510465, gi... - gi\|153818970\|ref\|ZP_01971637.1\| flagellar protein FliL, putative [Vibrio cholerae NCTC 8457], gi\|126... gi\|229351940, gi... - gi\|229511975\|ref\|ZP_04401454.1\| flagellar biosynthesis protein FliL [Vibrio cholerae B33], gi\|229351... gi\|9656677, gi\|1... - gi\|9656677\|gb\|AAF95272.1\| flagellar protein FliL, putative [Vibrio cholerae O1 biovar El Tor str. N1... gi\|11355897 - pir\|\|A82117 probable flagellar protein FliL VC2127 [imported] - Vibrio cholerae (strain N16961 serog... gi\|153828598, gi... - gi\|153828598\|ref\|ZP_01981265.1\| putative flagellar protein FliL [Vibrio cholerae 623-39], gi\|1488758... gi\|254844917, gi... - gi\|75830316\|ref\|ZP_00759596.1\| COG1580: Flagellar basal body-associated protein [Vibrio cholerae MO1... gi\|75827430, gi\|... - gi\|75827430\|ref\|ZP_00756865.1\| COG1580: Flagellar basal body-associated protein [Vibrio cholerae O39... gi\|75824669, gi\|... - gi\|75824669\|ref\|ZP_00754117.1\| COG1580: Flagellar basal body-associated protein [Vibrio cholerae RC3...	159.0	[0..1]	[164..1]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDVENTGS KKKLFILIAL AVTLLIGAGV AAWFLMGDDT PESGMAATSA NQQVSAVVEP  60
   61 AYYVIMPQPF IFNVVGDKRD RVVQVKVQLM VRGNNNEALA QQHIPLIEST LLQSFGAATV 120
  121 EQLRTPNGRI DLRKQALFAI QSSMEKISGQ QVVDRVLFTG FVMQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.638272
Match:	PF03748.5
Description:	No description for PF03748.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits