YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46912544, gi\|...
Organism:	Photobacterium profundum SS9
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46912544, gi|....

Description	E-value	Query Range	Subject Range
gi\|27365282, gi\|... - gi\|27365282\|ref\|NP_760810.1\| flagellar assembly protein H [Vibrio vulnificus CMCP6], gi\|27361429\|gb\|... gi\|37199412, gi\|... - gi\|37680663\|ref\|NP_935272.1\| flagellar assembly protein H [Vibrio vulnificus YJ016], gi\|37199412\|dbj...	207.0	[0..1]	[263..1]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDDRRRGFL RVSEHQAEEL ERWAYPDYSK IQEAPRDNAL NYDPLWQPQE LEEEEEQGPP  60
   61 PLTAADLEHI RQSASDEGFN EGKVTGHTEG FDVGKIEGLE AGHAEGLEQG LAQGLEQGQA 120
  121 QITEHVSHLT QLVEKLANPL KQLDAEVESQ VLTLVTSLTR ELIRVEVQTN PQVMLNTIRE 180
  181 VIATLPIAER QIRLSLHPDD LENVRQAYGD ENLVERKWTL IGEPSLNRGD LQVQSGDSTV 240
  241 DYYIDDRIRH LLEQFSGVNS QRGEAL

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Detection Method:	FFAS03
Confidence:	0.966
Match:	2dm9A
Description:	No description for 2dm9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits