YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54308090, gi\|...
Organism:	Photobacterium profundum SS9
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54308090, gi|....

Description	E-value	Query Range	Subject Range
gi\|90328211, gi\|... - gi\|90410998\|ref\|ZP_01219012.1\| putative negative regulator of flagellin synthesis FlgM [Photobacteri...	97.0	[0..1]	[104..1]
gi\|89075487, gi\|... - gi\|89075487\|ref\|ZP_01161898.1\| putative negative regulator of flagellin synthesis FlgM [Photobacteri...	96.0	[0..1]	[104..1]
gi\|90438786, gi\|... - gi\|90579901\|ref\|ZP_01235709.1\| putative negative regulator of flagellin synthesis FlgM [Vibrio angus...	96.0	[0..1]	[104..1]
gi\|85836109, gi\|... - gi\|86146162\|ref\|ZP_01064488.1\| polar flagellar FlgM [Vibrio sp. MED222], gi\|85836109\|gb\|EAQ54241.1\| ...	95.0	[0..1]	[104..18]
gi\|37679140, gi\|... - gi\|37679140\|ref\|NP_933749.1\| negative regulator FlgM of flagellin synthesis [Vibrio vulnificus YJ016... gi\|27359828, gi\|... - gi\|27363712\|ref\|NP_759240.1\| anti-sigma28 factor [Vibrio vulnificus CMCP6], gi\|27359828\|gb\|AAO08767....	92.0	[0..1]	[102..1]
gi\|84377151, gi\|... - gi\|84388084\|ref\|ZP_00990980.1\| polar flagellar FlgM [Vibrio splendidus 12B01], gi\|84377151\|gb\|EAP940...	92.0	[0..1]	[104..1]
gi\|148875171, gi... - gi\|153829330\|ref\|ZP_01981997.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae 623-... gi\|153825319, gi... - gi\|153825319\|ref\|ZP_01977986.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae MZO-... gi\|183179558, gi... - gi\|183179558\|ref\|ZP_02957769.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae MZO-... gi\|229369878, gi... - gi\|229607223\|ref\|YP_002877871.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae MJ-... gi\|229341078, gi... - gi\|229522153\|ref\|ZP_04411570.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae TM 1... gi\|229519221, gi... - gi\|229519221\|ref\|ZP_04408664.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae RC9]... gi\|9656761, gi\|1... - gi\|9656761\|gb\|AAF95349.1\| negative regulator of flagellin synthesis FlgM, putative [Vibrio cholerae ... gi\|229513848, gi... - gi\|229513848\|ref\|ZP_04403310.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae TMA ... gi\|11346217 - pir\|\|B82105 probable negative regulator of flagellin synthesis FlgM VC2204 [imported] - Vibrio chole... gi\|229355224, gi... - gi\|229507719\|ref\|ZP_04397224.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae BX 3... gi\|254286487, gi... - gi\|254286487\|ref\|ZP_04961444.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae AM-1... gi\|227082328, gi... - gi\|227082328\|ref\|YP_002810879.1\| putative negative regulator of flagellin synthesis FlgM [Vibrio cho... gi\|75831292, gi\|... - gi\|75831292\|ref\|ZP_00760557.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|75823922, gi\|... - gi\|75823922\|ref\|ZP_00753396.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|75827498, gi\|... - gi\|75827498\|ref\|ZP_00756933.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|75820899, gi\|... - gi\|75820899\|ref\|ZP_00750937.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|121726568, gi... - gi\|75816991\|ref\|ZP_00747447.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|121549538, gi... - gi\|121586272\|ref\|ZP_01676062.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae 2740... gi\|153213629, gi... - gi\|153213629\|ref\|ZP_01948902.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae 1587... gi\|153221228, gi... - gi\|153221228\|ref\|ZP_01952243.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae MAK ... gi\|126512366, gi... - gi\|153817098\|ref\|ZP_01969765.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae NCTC... gi\|153820886, gi... - gi\|229512086\|ref\|ZP_04401565.1\| negative regulator of flagellin synthesis FlgM [Vibrio cholerae B33]...	89.0	[0..1]	[103..1]
gi\|5361001 - gi\|5361001\|gb\|AAD42908.1\|U12817_2 polar flagellar FlgM homolog [Vibrio parahaemolyticus] gi\|153839086, gi... - gi\|153843813\|ref\|ZP_01993595.1\| polar flagellar FlgM [Vibrio parahaemolyticus AQ3810], gi\|153839086\|...	88.0	[0..1]	[103..1]
gi\|28805757, gi\|... - gi\|28897545\|ref\|NP_797150.1\| polar flagellar FlgM [Vibrio parahaemolyticus RIMD 2210633], gi\|2880575... gi\|28805757 - gi\|28805757\|dbj\|BAC59034.1\| polar flagellar FlgM [Vibrio parahaemolyticus RIMD 2210633]	88.0	[0..1]	[103..1]
gi\|91189516, gi\|... - gi\|91225866\|ref\|ZP_01260835.1\| polar flagellar FlgM [Vibrio alginolyticus 12G01], gi\|91189516\|gb\|EAS... gi\|75855307, gi\|... - gi\|75855307\|ref\|ZP_00762962.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	85.0	[0..1]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIDHLRNS QPMTTARNNQ SKVTTTSSGS QPTSAPSLGR QDAVSLSSQG KAVGQIHQQL  60
   61 ATEPSFDSAK VAAIKEAISS GAYVVDADKL ASNMMKFEDE LRGL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.43
Match:	1rp3B
Description:	Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits