| Protein: | Y561_PHOPR |
| Organism: | Photobacterium profundum SS9 |
| Length: | 259 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y561_PHOPR.
| Description | E-value | Query Range |
Subject Range |
|
|
403.0 | [0..1] | [257..1] |
|
|
402.0 | [0..1] | [257..27] |
|
|
402.0 | [0..1] | [259..1] |
|
|
401.0 | [0..1] | [257..1] |
|
|
400.0 | [0..1] | [257..1] |
|
|
399.0 | [0..1] | [257..1] |
|
|
397.0 | [0..1] | [257..1] |
|
|
395.0 | [0..1] | [257..1] |
|
|
395.0 | [0..1] | [257..1] |
|
Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MLIVVSPAKT LDYDSPLATQ TYTLPELTDH SSELMKVCRE LTPMDIASLM KVSDKIAGLN 60
61 AARFAEWQPE
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.784 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.674 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.609 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.592 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.575 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.545 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.478 | a.4.1 | Homeodomain-like |
| View | Download | 0.453 | a.4.1 | Homeodomain-like |
| View | Download | 0.424 | a.4.1 | Homeodomain-like |
|
Region A: Residues: [71-149] |
1 11 21 31 41 51
| | | | | |
1 FTTENARQAI LAFKGDVYTG LAAETMTEED FAYTQQHLRM LSGLYGLLRP LDLMQPYRLE 60
61 MGTKLANPRG ANLYQFWGS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.874 | N/A | N/A | a.29.13 | Description not found. |
| View | Download | 0.869 | N/A | N/A | a.8.11 | Description not found. |
| View | Download | 0.753 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.750 | N/A | N/A | a.159.2 | FF domain |
| View | Download | 0.656 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.487 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.420 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [150-259] |
1 11 21 31 41 51
| | | | | |
1 VITEKLNAAL AEQGDNILIN LASNEYFKSV KPKSLDAQLI TPVFKDCKNG NYKVISFYAK 60
61 KARGMMARYI IDNRIKSVDE LKQFDVAGYY FVPAESTRKE FVFKREEQVK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.664 | N/A | N/A | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.639 | N/A | N/A | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.585 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.532 | N/A | N/A | b.26.1 | SMAD/FHA domain |
| View | Download | 0.487 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.465 | N/A | N/A | d.326.1 | Description not found. |
| View | Download | 0.353 | N/A | N/A | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.351 | N/A | N/A | b.24.1 | Hyaluronate lyase-like, C-terminal domain |
| View | Download | 0.326 | N/A | N/A | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.295 | N/A | N/A | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
