YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46916534, gi\|...
Organism:	Photobacterium profundum SS9
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46916534, gi|....

Description	E-value	Query Range	Subject Range
gi\|91191951, gi\|... - gi\|91223138\|ref\|ZP_01258404.1\| hypothetical protein V12G01_04826 [Vibrio alginolyticus 12G01], gi\|91...	165.0	[0..14]	[113..1]
gi\|28901461, gi\|... - gi\|28901461\|ref\|NP_801116.1\| hypothetical protein VPA1606 [Vibrio parahaemolyticus RIMD 2210633], gi... gi\|28810008 - gi\|28810008\|dbj\|BAC62949.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|153837283, gi... - gi\|153837283\|ref\|ZP_01989950.1\| protein YdhR [Vibrio parahaemolyticus AQ3810], gi\|149749423\|gb\|EDM60...	164.0	[0..14]	[113..1]
gi\|90412360, gi\|... - gi\|90412360\|ref\|ZP_01220364.1\| hypothetical protein P3TCK_11264 [Photobacterium profundum 3TCK], gi\|...	163.0	[0..14]	[114..1]
gi\|194709405, gi... - gi\|194733903\|ref\|YP_002116403.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|195632271, gi... - gi\|195632271\|gb\|EDX50755.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|56415379, gi\|... - gi\|56415379\|ref\|YP_152454.1\| hypothetical protein SPA3327 [Salmonella enterica subsp. enterica serov... gi\|168260825, gi... - gi\|205350242\|gb\|EDZ36873.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|62129598, gi\|... - gi\|62181965\|ref\|YP_218382.1\| hypothetical protein SC3395 [Salmonella enterica subsp. enterica serova... gi\|168235047, gi... - gi\|197291590\|gb\|EDY30942.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|161616492, gi... - gi\|161616492\|ref\|YP_001590456.1\| hypothetical protein SPAB_04307 [Salmonella enterica subsp. enteric... gi\|224469784, gi... - gi\|224585256\|ref\|YP_002639055.1\| hypothetical protein SPC_3530 [Salmonella enterica subsp. enterica ... gi\|204928566, gi... - gi\|204928566\|ref\|ZP_03219765.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Javiana st... gi\|200388370, gi... - gi\|200388370\|ref\|ZP_03214982.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Virchow st... gi\|197364309, gi... - gi\|197364309\|ref\|YP_002143946.1\| hypothetical protein SSPA3105 [Salmonella enterica subsp. enterica ...	160.0	[0..16]	[111..4]
gi\|29896856, gi\|... - gi\|30021302\|ref\|NP_832933.1\| hypothetical protein BC3192 [Bacillus cereus ATCC 14579], gi\|29896856\|g... gi\|229128476, gi... - gi\|229128476\|ref\|ZP_04257455.1\| hypothetical protein bcere0015_29220 [Bacillus cereus BDRD-Cer4], gi...	158.0	[0..14]	[113..3]
gi\|29144309, gi\|... - gi\|29144309\|ref\|NP_807651.1\| hypothetical protein t4044 [Salmonella enterica subsp. enterica serovar... gi\|16762822 - gi\|16762822\|ref\|NP_458439.1\| hypothetical protein STY4337 [Salmonella enterica subsp. enterica serov... gi\|16505128, gi\|... - gi\|25337272\|pir\|\|AD1003 conserved hypothetical protein STY4337 [imported] - Salmonella enterica subs... gi\|238913584 - gi\|238913584\|ref\|ZP_04657421.1\| hypothetical protein SentesTe_20978 [Salmonella enterica subsp. ente... gi\|16766749, gi\|... - gi\|16766749\|ref\|NP_462364.1\| hypothetical protein STM3461 [Salmonella typhimurium LT2], gi\|16422018\|... gi\|205327577, gi... - gi\|205327577\|gb\|EDZ14341.1\| protein YdhR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|205325877, gi... - gi\|205325877\|gb\|EDZ13716.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|213649017 - gi\|213649017\|ref\|ZP_03379070.1\| hypothetical protein SentesTy_18098 [Salmonella enterica subsp. ente... gi\|213586815 - gi\|213586815\|ref\|ZP_03368641.1\| hypothetical protein SentesTyph_38280 [Salmonella enterica subsp. en... gi\|213417471 - gi\|213417471\|ref\|ZP_03350613.1\| hypothetical protein Salmonentericaenterica_06062 [Salmonella enteri... gi\|213163712 - gi\|213163712\|ref\|ZP_03349422.1\| hypothetical protein Salmoneentericaenterica_28343 [Salmonella enter... gi\|214000199 - gi\|214000199\|ref\|ZP_03410934.1\| hypothetical protein Salmonellentericaenterica_05886 [Salmonella ent... gi\|213857519 - gi\|213857519\|ref\|ZP_03384490.1\| hypothetical protein SentesT_20439 [Salmonella enterica subsp. enter... gi\|194445704, gi... - gi\|194445704\|ref\|YP_002042711.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Newport s... gi\|205344415, gi... - gi\|205344415\|gb\|EDZ31179.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|205338808, gi... - gi\|205338808\|gb\|EDZ25572.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|168232590, gi... - gi\|205333175\|gb\|EDZ19939.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|197240395, gi... - gi\|197262140\|ref\|ZP_03162214.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197212436, gi... - gi\|197248733\|ref\|YP_002148380.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Agona str... lcl\|NC_016856.1_... - [gene=STM14_4166] [protein=hypothetical protein] [protein_id=YP_005239652.1] [location=complement(36... gi\|194456223, gi... - gi\|194469859\|ref\|ZP_03075843.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|194409508, gi... - gi\|194451204\|ref\|YP_002047484.1\| hypothetical protein SeHA_C3766 [Salmonella enterica subsp. enteric...	158.0	[0..16]	[111..4]
Q665T5\|Q665T5_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|21960513, gi\|... - gi\|22127423\|ref\|NP_670846.1\| hypothetical protein y3549 [Yersinia pestis KIM], gi\|21960513\|gb\|AAM870... gi\|167418717, gi... - gi\|167418717\|ref\|ZP_02310470.1\| putative monooxygenase, YdhR [Yersinia pestis biovar Orientalis str.... gi\|25337271 - pir\|\|AH0077 conserved hypothetical protein YPO0629 [imported] - Yersinia pestis (strain CO92) gi\|167054620, gi... - gi\|167426397\|ref\|ZP_02318150.1\| putative monooxygenase, YdhR [Yersinia pestis biovar Mediaevalis str... gi\|51597723, gi\|... - gi\|51597723\|ref\|YP_071914.1\| hypothetical protein YPTB3426 [Yersinia pseudotuberculosis IP 32953], g... gi\|167466780 - gi\|167466780\|ref\|ZP_02331484.1\| putative monooxygenase, YdhR [Yersinia pestis FV-1] gi\|229690001, gi... - gi\|229842935\|ref\|ZP_04463086.1\| hypothetical protein YPF_1283 [Yersinia pestis biovar Orientalis str... gi\|45442711, gi\|... - gi\|45442711\|ref\|NP_994250.1\| hypothetical protein YP_2946 [Yersinia pestis biovar Microtus str. 9100... gi\|170022856, gi... - gi\|170022856\|ref\|YP_001719361.1\| hypothetical protein YPK_0605 [Yersinia pseudotuberculosis YPIII], ... gi\|229696886, gi... - gi\|229840520\|ref\|ZP_04460679.1\| hypothetical protein YPH_2862 [Yersinia pestis biovar Orientalis str... gi\|186699933, gi... - gi\|186896907\|ref\|YP_001874019.1\| hypothetical protein YPTS_3609 [Yersinia pseudotuberculosis PB1/+],... gi\|229837306, gi... - gi\|229837306\|ref\|ZP_04457469.1\| hypothetical protein YPS_1220 [Yersinia pestis Pestoides A], gi\|2297... gi\|15978719, gi\|... - gi\|218927823\|ref\|YP_002345698.1\| hypothetical protein YPO0629 [Yersinia pestis CO92], gi\|16120955\|re... gi\|77635768, gi\|... - gi\|77635768\|ref\|ZP_00797849.1\| hypothetical protein YpesA_01000945 [Yersinia pestis Angola], gi\|1624... gi\|77630432, gi\|... - gi\|77630432\|ref\|ZP_00793018.1\| hypothetical protein YpseI_01001803 [Yersinia pseudotuberculosis IP 3... gi\|145209420, gi... - gi\|145597724\|ref\|YP_001161800.1\| hypothetical protein YPDSF_0414 [Yersinia pestis Pestoides F], gi\|1... gi\|150260338, gi... - gi\|150260338\|ref\|ZP_01917066.1\| hypothetical protein YPE_2639 [Yersinia pestis CA88-4125], gi\|149289... gi\|165992315, gi... - gi\|166008976\|ref\|ZP_02229874.1\| putative monooxygenase, YdhR [Yersinia pestis biovar Antiqua str. E1... gi\|166206582, gi... - gi\|166211836\|ref\|ZP_02237871.1\| putative monooxygenase, YdhR [Yersinia pestis biovar Antiqua str. B4... gi\|108781065, gi... - gi\|108809152\|ref\|YP_653068.1\| hypothetical protein YPA_3161 [Yersinia pestis Antiqua], gi\|108781065\|... gi\|108810657, gi... - gi\|229900849\|ref\|ZP_04515973.1\| hypothetical protein YP516_0508 [Yersinia pestis Nepal516], gi\|22968... gi\|165937829, gi... - gi\|89103727\|ref\|ZP_01176293.1\| hypothetical protein Ypesb_01002279 [Yersinia pestis biovar Orientali...	158.0	[0..14]	[113..1]
gi\|83754036, gi\|... - gi\|83754037\|pdb\|2ASY\|B Chain B, Solution Structure Of Ydhr Protein From Escherichia Coli, gi\|8375403...	156.0	[0..14]	[113..23]
gi\|170019983, gi... - gi\|170019983\|ref\|YP_001724937.1\| hypothetical protein EcolC_1964 [Escherichia coli ATCC 8739], gi\|16... gi\|194417035, gi... - gi\|194434697\|ref\|ZP_03066950.1\| YdhR protein [Shigella dysenteriae 1012], gi\|194417035\|gb\|EDX33151.1... gi\|169889162, gi... - gi\|170081327\|ref\|YP_001730647.1\| putative mono-oxygenase [Escherichia coli str. K-12 substr. DH10B],... gi\|218361001, gi... - gi\|218554233\|ref\|YP_002387146.1\| hypothetical protein ECIAI1_1718 [Escherichia coli IAI1], gi\|218361... gi\|209918980, gi... - gi\|209918980\|ref\|YP_002293064.1\| hypothetical protein ECSE_1789 [Escherichia coli SE11], gi\|20991223... gi\|218351960, gi... - gi\|218695228\|ref\|YP_002402895.1\| hypothetical protein EC55989_1834 [Escherichia coli 55989], gi\|2183... gi\|124498459, gi... - gi\|124531604\|ref\|ZP_01701815.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498459\|gb... EG13952 - putative monooxygenase / Predicted monooxygenase, function unknown; dimeric gi\|110805643, gi... - gi\|110805643\|ref\|YP_689163.1\| hypothetical protein SFV_1689 [Shigella flexneri 5 str. 8401], gi\|1106... YDHR_SHIFL - Putative monooxygenase YdhR OS=Shigella flexneri GN=ydhR PE=3 SV=1 gi\|24113056, gi\|... - gi\|24113056\|ref\|NP_707566.1\| hypothetical protein SF1695 [Shigella flexneri 2a str. 301], gi\|2405202... gi\|30041433, gi\|... - gi\|30063181\|ref\|NP_837352.1\| hypothetical protein S1827 [Shigella flexneri 2a str. 2457T], gi\|300414... EG13952 - putative monooxygenase / Predicted monooxygenase, function unknown; dimeric gi\|193064954, gi... - gi\|75257084\|ref\|ZP_00728644.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli E22]... gi\|75512901, gi\|... - gi\|75512901\|ref\|ZP_00735382.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli 5363... gi\|193071602, gi... - gi\|75214851\|ref\|ZP_00713334.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli E110... gi\|190904024, gi... - gi\|75230887\|ref\|ZP_00717336.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli B7A]... gi\|89108507, gi\|... - gi\|89108507\|ref\|AP_002287.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|238862986, gi... - gi\|238900882\|ref\|YP_002926678.1\| hypothetical protein BWG_1481 [Escherichia coli BW2952], gi\|2388629... gi\|74312008, gi\|... - gi\|74312008\|ref\|YP_310427.1\| hypothetical protein SSON_1489 [Shigella sonnei Ss046], gi\|73855485\|gb\|... gi\|82543965, gi\|... - gi\|82543965\|ref\|YP_407912.1\| hypothetical protein SBO_1465 [Shigella boydii Sb227], gi\|81245376\|gb\|A... gi\|75190704, gi\|... - gi\|75190704\|ref\|ZP_00703971.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli E243... gi\|157066812, gi... - gi\|75195744\|ref\|ZP_00705814.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli HS],... YDHR_ECOLI - Protein ydhR precursor - Escherichia coli gi\|75175192, gi\|... - gi\|75175192\|ref\|ZP_00695510.1\| COG0113: Delta-aminolevulinic acid dehydratase [Shigella boydii BS512...	156.0	[0..14]	[113..1]
gi\|222096691, gi... - gi\|222096691\|ref\|YP_002530748.1\| Protein ydhR precursor [Bacillus cereus Q1], gi\|221240749\|gb\|ACM134... gi\|229197329, gi... - gi\|229197329\|ref\|ZP_04324058.1\| hypothetical protein bcere0001_28760 [Bacillus cereus m1293], gi\|228... gi\|51975794, gi\|... - gi\|52142325\|ref\|YP_084505.1\| hypothetical protein BCZK2918 [Bacillus cereus E33L], gi\|51975794\|gb\|AA...	155.0	[0..14]	[112..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLVLLKHG DTTMAKLLQV DFEFNGPFGE DMAKAFVELA ESINREPGMI WKIWTESAKD  60
   61 KLGGGIYLFE DEASAQAYLQ MHTARLQQMG IGEVRGHIFD INQPLTAINN SPINQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1wd6A
Description:	crystal structure of JW1657 from Escherichia coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits