YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54302489, gi\|...
Organism:	Photobacterium profundum SS9
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54302489, gi|....

Description	E-value	Query Range	Subject Range
gi\|90412333, gi\|... - gi\|90412333\|ref\|ZP_01220338.1\| hypothetical protein P3TCK_09873 [Photobacterium profundum 3TCK], gi\|...	115.0	[0..15]	[93..1]
gi\|116220998, gi... - gi\|75820411\|ref\|ZP_00750459.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler...	93.0	[0..33]	[90..21]
gi\|148874016, gi... - gi\|153830521\|ref\|ZP_01983188.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887401... gi\|153825077, gi... - gi\|153825077\|ref\|ZP_01977744.1\| conserved hypothetical protein, putative [Vibrio cholerae MZO-2], gi... gi\|254846321, gi... - gi\|75830967\|ref\|ZP_00760236.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|75825808, gi\|... - gi\|75825808\|ref\|ZP_00755244.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|121549019, gi... - gi\|121586722\|ref\|ZP_01676505.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215490... gi\|153214428, gi... - gi\|153214428\|ref\|ZP_01949399.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124115377\|... gi\|124118959, gi... - gi\|153222322\|ref\|ZP_01953072.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241189... gi\|227811809, gi... - gi\|227811809\|ref\|YP_002811819.1\| hypothetical protein VCM66_A0181 [Vibrio cholerae M66-2], gi\|227010... gi\|9657577, gi\|1... - gi\|9657577\|gb\|AAF96098.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N1696... gi\|126512607, gi... - gi\|153816804\|ref\|ZP_01969471.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|11354762 - pir\|\|B82489 conserved hypothetical protein VCA0185 [imported] - Vibrio cholerae (strain N16961 serog...	92.0	[0..33]	[90..5]
gi\|75822937, gi\|... - gi\|75822937\|ref\|ZP_00752484.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler...	88.0	[0..41]	[90..6]
gi\|28808719, gi\|... - gi\|28900408\|ref\|NP_800063.1\| hypothetical protein VPA0553 [Vibrio parahaemolyticus RIMD 2210633], gi... gi\|28808719 - gi\|28808719\|dbj\|BAC61896.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	87.0	[0..33]	[90..8]
gi\|27358518, gi\|... - gi\|27366951\|ref\|NP_762478.1\| hypothetical protein VV2_0518 [Vibrio vulnificus CMCP6], gi\|27358518\|gb...	85.0	[0..35]	[90..8]
gi\|15602994, gi\|... - gi\|15602994\|ref\|NP_246066.1\| hypothetical protein PM1129 [Pasteurella multocida subsp. multocida str...	82.0	[0..36]	[86..7]
gi\|53732892 - gi\|53732892\|ref\|ZP_00155232.2\| COG3036: Uncharacterized protein conserved in bacteria [Haemophilus i... gi\|144983376 - gi\|144983376\|gb\|EDJ90858.1\| hypothetical protein CGSHi22421_05515 [Haemophilus influenzae R3021] gi\|145637212, gi... - gi\|145637212\|ref\|ZP_01792874.1\| hypothetical protein CGSHiHH_00813 [Haemophilus influenzae PittHH], ... gi\|145631091 - gi\|145631091\|ref\|ZP_01786866.1\| hypothetical protein CGSHi22421_05515 [Haemophilus influenzae 22.4-2...	82.0	[0..25]	[86..4]
gi\|91227012, gi\|... - gi\|91227012\|ref\|ZP_01261549.1\| hypothetical protein V12G01_06606 [Vibrio alginolyticus 12G01], gi\|91...	78.0	[0..33]	[90..8]
gi\|52426015, gi\|... - gi\|52426015\|ref\|YP_089152.1\| hypothetical protein MS1960 [Mannheimia succiniciproducens MBEL55E], gi...	76.0	[0..27]	[86..15]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQITGIHND EERQMPKKRK LKQCKQKESV DFPRLEPNST DTEFGRGTIR DNALKAVVTS  60
   61 KLFITRVVKA KKGKGSFQRK DKDKGQEPYS IAA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits