YRC Public Data Repository - Protein Structure Prediction

Protein:	RL6_SYMTH
Organism:	Symbiobacterium thermophilum IAM 14863
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL6_SYMTH.

Description	E-value	Query Range	Subject Range
RL6_GEOSE - 50S ribosomal protein L6 OS=Geobacillus stearothermophilus GN=rplF PE=1 SV=2 RL6_GEOKA - 50S ribosomal protein L6 OS=Geobacillus kaustophilus (strain HTA426) GN=rplF PE=3 SV=1 RL6_GEOKA - 50S ribosomal protein L6 OS=Geobacillus kaustophilus GN=rplF PE=3 SV=1 gi\|221089337, gi... - gi\|221089337\|ref\|ZP_03558857.1\| ribosomal protein L6 [Geobacillus sp. Y412MC61], gi\|220706763\|gb\|EED... gi\|229500490, gi... - gi\|229500490\|ref\|ZP_04394151.1\| ribosomal protein L6 [Geobacillus sp. Y412MC52], gi\|229328607\|gb\|EEN...	249.0	[0..1]	[178..1]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIGKAPIE IPAGVEVTVE GNLVRVKGPK GELSREIHPA MSITIENGAL RVSRPSDERE  60
   61 HKALHGLTRT LIANMVEGVT KGYSKTLELV GTGYRAAKTG NQLTLSVGYS HPVVFNPPPG 120
  121 IEFQVPAPNQ VIVAGIDKQL VGQVAADIRA TRPPEPYLGK GIKYAGEHIR RKVGKAGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.39794
Match:	1c04B
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.94614353072897	bayes_pls_golite062009
structural molecule activity	9.3691467221987	bayes_pls_golite062009
binding	1.17169736942297	bayes_pls_golite062009
protein binding	0.574304313407193	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: