YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51893596, gi\|...
Organism:	Symbiobacterium thermophilum IAM 14863
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51893596, gi|....

Description	E-value	Query Range	Subject Range
gi\|223488779, gi... - gi\|254479407\|ref\|ZP_05092739.1\| Glycerophosphoryl diester phosphodiesterase family protein [Carboxyd... gi\|20807473 - gi\|20807473\|ref\|NP_622644.1\| Glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon... gi\|20807473, gi\|... - gi\|20807473\|ref\|NP_622644.1\| glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon...	262.0	[0..2]	[235..3]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQVIGHRGA AGTHPENTMV SFRRAFELGV DGIEFDVHRT ADGHLVVIHD PAVDRTTDGS  60
   61 GLVMAMTLEQ IRALDAGSWK DPRFAGERVP TLQELVRATP PGVRLYLELK AGSVHYPGIE 120
  121 QELVDLLKAE GVLDRTQVSS FDHRALVKLK EICPELPLGM LTSSNLVDPV GMAKAIGCEA 180
  181 IHPAWPWVTP EYVEAAHAAG LKVNCWTVND PLALALMQNA GVDGIMTDYP ERLRNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.045757
Match:	2oogA
Description:	No description for 2oogA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits