YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|53725863, gi|...
Organism: Burkholderia mallei ATCC 23344
Length: 221 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|53725863, gi|....

Description E-value Query
Range
Subject
Range
gi|83653446, gi|... - gi|83719621|ref|YP_441300.1| superoxide dismutase [Burkholderia thailandensis E264], gi|83653446|gb|...
326.0 [0..1] [221..1]

Back

Predicted Domain #1
Region A:
Residues: [1-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGYSDSPTI GRSAASNTAL PTYTSKEPIM AHTLPPLPYA EDALAPHISQ ETIQFHYGKH  60
   61 HQAYVTNLNN LIPGTEFENL PLEEIVKKSS GGIFNNAAQI WNHTFFWNSL SPNGGGAPTG 120
  121 ALGDAINAKW GSFDAFKEAF TKAAVGTFGS GWAWLVKKAD GSLDIVSTSN AATPLTTADK 180
  181 PLVTIDVWEH AYYIDYRNAR PKFVEAFWNI VNWDFAAKNF A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.69897
Match: 1dt0A
Description: Fe superoxide dismutase (FeSOD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
superoxide dismutase activity 7.08472506566271 bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor 7.08472506566271 bayes_pls_golite062009
structural constituent of ribosome 5.72997742104809 bayes_pls_golite062009
structural molecule activity 5.36636990455827 bayes_pls_golite062009
oxidoreductase activity 2.73079314406851 bayes_pls_golite062009
binding 1.73495523339859 bayes_pls_golite062009
protein binding 1.36581969443298 bayes_pls_golite062009
antioxidant activity 0.766723962166325 bayes_pls_golite062009
cation binding 0.485672227923388 bayes_pls_golite062009
metal ion binding 0.485672227923388 bayes_pls_golite062009
ion binding 0.480092270451566 bayes_pls_golite062009
catalytic activity 0.390489225704392 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle