YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|53725407, gi\|...
Organism:	Burkholderia mallei ATCC 23344
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|53725407, gi|....

Description	E-value	Query Range	Subject Range
gi\|76578613, gi\|... - gi\|76809160\|ref\|YP_332811.1\| hypothetical protein BURPS1710b_1401 [Burkholderia pseudomallei 1710b],... gi\|53718816, gi\|... - gi\|53718816\|ref\|YP_107802.1\| putative globin [Burkholderia pseudomallei K96243], gi\|52209230\|emb\|CAH... gi\|242138028, gi... - gi\|242314789\|ref\|ZP_04813805.1\| protozoan/cyanobacterial globin family protein [Burkholderia pseudom... gi\|217419997, gi... - gi\|217419997\|ref\|ZP_03451503.1\| protozoan/cyanobacterial globin family protein [Burkholderia pseudom...	201.0	[0..1]	[148..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFDSTDSTD SRMIDVTDDA PSPPTAFELV GGEARVRELV DRFYDLMDLE PEFAGIRALH  60
   61 PPTLEGSRDK LFWFLCGWLG GPDHYIERFG HPRLRARHLP FPIASSERDQ WLRCIAWAMQ 120
  121 DVGLDEPLRE RLMHSFHDTA DWMRNRPG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	2bkmA
Description:	No description for 2bkmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits