YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52426413, gi\|...
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52426413, gi|....

Description	E-value	Query Range	Subject Range
gi\|150840672, gi... - gi\|75428698\|ref\|ZP_00731827.1\| hydrogenase maturation factor [Actinobacillus succinogenes 130Z], gi\|...	117.0	[0..1]	[90..1]
gi\|186680890, gi... - gi\|53688951\|ref\|ZP_00112364.2\| COG0298: Hydrogenase maturation factor [Nostoc punctiforme PCC 73102]...	108.0	[0..1]	[81..1]
gi\|75910799, gi\|... - gi\|75910799\|ref\|YP_325095.1\| hydrogenase expression/formation protein (HUPF/HYPC) [Anabaena variabil...	107.0	[0..1]	[83..1]
gi\|32034185 - gi\|32034185\|ref\|ZP_00134407.1\| COG0298: Hydrogenase maturation factor [Actinobacillus pleuropneumoni...	107.0	[0..1]	[88..1]
gi\|46055, gi\|2126466 - gi\|46055\|emb\|CAA43328.1\| HypD [Rhodobacter capsulatus], pir\|\|S59984 hypD protein - Rhodobacter capsu...	105.0	[0..1]	[85..1]
gi\|17130040, gi\|... - gi\|17228190\|ref\|NP_484738.1\| hydrogenase expression/formation protein [Nostoc sp. PCC 7120], gi\|1713... gi\|25313751 - pir\|\|AE1893 hydrogenase expression/formation protein [imported] - Nostoc sp. (strain PCC 7120)	105.0	[0..1]	[80..1]
gi\|148716089, gi... - gi\|148825929\|ref\|YP_001290682.1\| hydrogenase 2 accessory protein HypG [Haemophilus influenzae PittEE... gi\|145639010, gi... - gi\|145639010\|ref\|ZP_01794618.1\| hypothetical protein CGSHiII_02450 [Haemophilus influenzae PittII], ... gi\|53732645 - gi\|53732645\|ref\|ZP_00154861.2\| COG0298: Hydrogenase maturation factor [Haemophilus influenzae R2846] gi\|144978361, gi... - gi\|145629518\|ref\|ZP_01785316.1\| hypothetical protein CGSHi22121_08863 [Haemophilus influenzae 22.1-2... gi\|42631692 - gi\|42631692\|ref\|ZP_00157230.1\| COG0298: Hydrogenase maturation factor [Haemophilus influenzae R2866]	103.0	[0..7]	[90..6]
gi\|110165672, gi... - gi\|71676652\|ref\|ZP_00674393.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Trichodesmium e...	102.0	[0..1]	[80..1]
YFRC_PROVU - Frd operon uncharacterized protein C OS=Proteus vulgaris PE=3 SV=1 gi\|197287386, gi... - gi\|197287386\|ref\|YP_002153258.1\| hydrogenase formation protein [Proteus mirabilis HI4320], gi\|194684... gi\|227358374, gi... - gi\|227358374\|ref\|ZP_03842714.1\| hydrogenase formation protein [Proteus mirabilis ATCC 29906], gi\|227...	101.0	[0..1]	[86..1]
gi\|98152891, gi\|... - gi\|98152891\|ref\|YP_611140.1\| hydrogenase assembly chaperone hypC/hupF [Sphingopyxis alaskensis RB225...	101.0	[0..1]	[90..1]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLGVPGQII DVGEDGFQPA VVDVCGVQRE VNISLICENN TTDLLGKWVL VHVGFAMSVI  60
   61 DEEEAKQTLS ALMTMSQLDH EVGDFAGLNK N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	2z1cA
Description:	No description for 2z1cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits