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View Structure Prediction Details

Protein: RL6_MANSM
Organism: Mannheimia succiniciproducens MBEL55E
Length: 177 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL6_MANSM.

Description E-value Query
Range
Subject
Range
RL6_MARHV - 50S ribosomal protein L6 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8...
246.0 [0..1] [177..1]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVAKAPVS VPAGVEVKLD GQLLTVKGKN GELTRTIHNF VEVKQDNNEL TFSPRNDGAE  60
   61 ANAQAGTTRA LVNAMVIGVT EGFTKKLQLV GVGYRAQVKG NVVNLSLGFS HPVEHTLPAG 120
  121 ITAECPSQTE IVLKGADKQL IGQVAADIRA YRSPEPYKGK GVRYSDEVVR TKEAKKK

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Detection Method: PSI-BLAST
Confidence: 63.045757
Match: 1vs6G
Description: No description for 1vs6G was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.94614353072897 bayes_pls_golite062009
structural molecule activity 9.3691467221987 bayes_pls_golite062009
binding 1.17169736942297 bayes_pls_golite062009
protein binding 0.574304313407193 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle