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View Structure Prediction Details

Protein: RL17_MANSM
Organism: Mannheimia succiniciproducens MBEL55E
Length: 127 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL17_MANSM.

Description E-value Query
Range
Subject
Range
RL17_THICR - 50S ribosomal protein L17 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplQ PE=3 SV=1
202.0 [0..1] [127..1]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHRKSGRQL NRNSSHRQAM FRNMASSLVS HEIIKTTLPK AKELRRVVEP LITLAKEDSV  60
   61 ANRRLAFART RNIETVAKLF NELGPRFAQR AGGYTRILKC GFRAGDNAPM AYIELVDRPE 120
  121 TAAAVEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.09691
Match: 1p85L
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.91574154879999 bayes_pls_golite062009
structural molecule activity 9.33953790706737 bayes_pls_golite062009
binding 1.23500675594838 bayes_pls_golite062009
protein binding 0.558431147696839 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle