YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52307714, gi\|...
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52307714, gi|....

Description	E-value	Query Range	Subject Range
gi\|165875640, gi... - gi\|165975539\|ref\|YP_001651132.1\| dihydroxyacetone kinase ADP-binding subunit [Actinobacillus pleurop... gi\|126207570, gi... - gi\|126207570\|ref\|YP_001052795.1\| dihydroxyacetone kinase ADP-binding subunit [Actinobacillus pleurop... gi\|46143308 - gi\|46143308\|ref\|ZP_00135506.2\| COG2376: Dihydroxyacetone kinase [Actinobacillus pleuropneumoniae ser...	235.0	[0..1]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTKQQILQ WLENCNRTFN ERRDYLTELD TAIGDGDHGL NMQRGFSKVM DKLPTIKDKD  60
   61 IGTILKNVGM TLLSQVGGAS GPLYGTFFIK GAQSAVGKEE ISFEELVQVL KDGVAGIVSR 120
  121 GHAELGDKTM CDVWLPVVNQ LEQEDGNQPL DALLKSAVEK ANISLQATIP LIAKKGRASY 180
  181 LAERSAGHQD PGATSTTYML EALYNAVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.39794
Match:	2btdA
Description:	No description for 2btdA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits