YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52425518, gi\|...
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52425518, gi|....

Description	E-value	Query Range	Subject Range
gi\|38637760, gi\|... - gi\|38637760\|ref\|NP_942734.1\| HypB2 [Ralstonia eutropha H16], gi\|32527098\|gb\|AAP85848.1\| HypB2 [Ralst... gi\|38637760, gi\|... - gi\|38637760\|ref\|NP_942734.1\| HypB2 [Cupriavidus necator], gi\|32527098\|gb\|AAP85848.1\| HypB2 [Ralstoni...	197.0	[0..1]	[270..1]

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Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCTTCGCGHP EQVRIGELQH THSHSEHQSA VKMPDFSQSV FHSMKPSIHE HAGEQDNTQK  60
   61 RLLKIEQDVL GKNNRIADSN RNLFNYLNLT VFNLVSSPGS GKTSLLTATL NSLKNDRNCY 120
  121 VIEGDQQTEN DADRIRATGV PAIQVNTGKG CHLDAQMISD AMMKLRPQEN GLLFIENVGN 180
  181 LVCPSEFDLG EKAKVVILSV TEGEDKPLKY PHMFAASKLM ILNKVDLLPY LKFDVEKCIE 240
  241 NAKRVNPQIE VIQLSAATGE GLQDWLNWLQ Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	2hf8A
Description:	No description for 2hf8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits