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View Structure Prediction Details

Protein: DAPD_MANSM
Organism: Mannheimia succiniciproducens MBEL55E
Length: 275 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPD_MANSM.

Description E-value Query
Range
Subject
Range
gi|1574480 - gi|1574480|gb|AAC23279.1| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (dapD) [Hae...
gi|1075340 - gi|1075340|pir||H64133 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1....
251.0 [0..1] [275..29]

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Predicted Domain #1
Region A:
Residues: [1-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLQSIIEA AFERRAEITP KTVDAQTKAA IEEVIAGLDC GKYRVAEKID GDWVTHQWLK  60
   61 KAVLLSFRIN DNQLIDGAET KYYDKVALKF ADYTEERFQQ EGFRVVPSAT VRKGAYIAKN 120
  121 TVLMPSYVNI GAFVDEGTMV DTWVTVGSCA QIGKNVHLSG GVGIGGVLEP LQANPTIIGD 180
  181 NCFIGARSEI VEGVIVEDGC VISMGVFIGQ STKIYDRETG EVHYGRVPAG SVVVSGSLPS 240
  241 KDGSHSLYCA VIVKKVDAKT LGKVGLNELL RTIEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.69897
Match: 1kgqA
Description: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.22811944286398 bayes_pls_golite062009
O-acyltransferase activity 1.64247384742412 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 1.61334532879528 bayes_pls_golite062009
acyltransferase activity 1.61097318205269 bayes_pls_golite062009
transferase activity, transferring acyl groups 1.61041958820284 bayes_pls_golite062009
transferase activity 1.1230560089123 bayes_pls_golite062009
O-acetyltransferase activity 0.289124788848623 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle