YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52425120, gi\|...
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52425120, gi|....

Description	E-value	Query Range	Subject Range
gi\|68249961, gi\|... - gi\|68249961\|ref\|YP_249073.1\| putative carbonic anhydrase [Haemophilus influenzae 86-028NP], gi\|68058... CAN_HAEIN - Carbonic anhydrase 2 OS=Haemophilus influenzae GN=can PE=1 SV=1 gi\|145638870, gi... - gi\|145638870\|ref\|ZP_01794478.1\| ABC transporter ATPase component [Haemophilus influenzae PittII], gi... gi\|229847450, gi... - gi\|229847450\|ref\|ZP_04467547.1\| asparaginyl-tRNA synthetase [Haemophilus influenzae 7P49H1], gi\|2298... gi\|144983695, gi... - gi\|145641688\|ref\|ZP_01797265.1\| putative carbonic anhydrase [Haemophilus influenzae R3021], gi\|14498... gi\|229845115, gi... - gi\|229845115\|ref\|ZP_04465250.1\| asparaginyl-tRNA synthetase [Haemophilus influenzae 6P18H1], gi\|2298... gi\|145634909, gi... - gi\|145634909\|ref\|ZP_01790616.1\| bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltr... gi\|145636233, gi... - gi\|145636233\|ref\|ZP_01791903.1\| asparaginyl-tRNA synthetase [Haemophilus influenzae PittHH], gi\|1452... gi\|145641688, gi... - gi\|145641688\|ref\|ZP_01797265.1\| putative carbonic anhydrase [Haemophilus influenzae R3021], gi\|14563... gi\|144986072, gi... - gi\|145633226\|ref\|ZP_01788957.1\| asparaginyl-tRNA synthetase [Haemophilus influenzae 3655], gi\|144986... gi\|144978213, gi... - gi\|145629370\|ref\|ZP_01785168.1\| putative carbonic anhydrase [Haemophilus influenzae 22.1-21], gi\|144... gi\|53732796 - gi\|53732796\|ref\|ZP_00155079.2\| COG0288: Carbonic anhydrase [Haemophilus influenzae R2846] gi\|46133535 - gi\|46133535\|ref\|ZP_00157344.2\| COG0288: Carbonic anhydrase [Haemophilus influenzae R2866] CAN_HAEIN - Carbonic anhydrase 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=can PE... gi\|148716211, gi... - gi\|148826051\|ref\|YP_001290804.1\| putative carbonic anhydrase [Haemophilus influenzae PittEE], gi\|148... gi\|148718245, gi... - gi\|148827003\|ref\|YP_001291756.1\| asparaginyl-tRNA synthetase [Haemophilus influenzae PittGG], gi\|148...	286.0	[0..1]	[228..1]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIEQLFAN NHSWALRMKE ENSSYFKELA DHQTPHYLWI GCSDSRVPAE KLTNLEPGEL  60
   61 FVHRNVANQV IHTDLNCLSV VQYAIDVLNI EHIIICGHTN CGGIKAAMAN QDLGLINNWL 120
  121 LHIRDIWYKH SHLLGNLSPE KRADMLTKIN VAEQVYNLGR ASIVQDAWKR GKKLSLHGWV 180
  181 YDVSDGFLID QGVLATSRES LEISYRNSIA RLKTLDEEDI FRKGNKENND EIIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.522879
Match:	2a8cA
Description:	No description for 2a8cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits