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View Structure Prediction Details

Protein: gi|52306974, gi|...
Organism: Mannheimia succiniciproducens MBEL55E
Length: 287 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52306974, gi|....

Description E-value Query
Range
Subject
Range
gi|145271112, gi... - gi|145639744|ref|ZP_01795346.1| penicillin-insensitive murein endopeptidase [Haemophilus influenzae ...
gi|145637361, gi... - gi|145637361|ref|ZP_01793021.1| penicillin-insensitive murein endopeptidase [Haemophilus influenzae ...
gi|144978974, gi... - gi|145628504|ref|ZP_01784304.1| penicillin-insensitive murein endopeptidase [Haemophilus influenzae ...
gi|53733133 - gi|53733133|ref|ZP_00156039.2| COG3770: Murein endopeptidase [Haemophilus influenzae R2866]
497.0 [0..2] [287..3]

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Predicted Domain #1
Region A:
Residues: [1-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKYLKTLVF STALLTGLTT VNAAPEDWQR IKRPIPSSNG QAEPIGSYSN GCIIGAQAMP  60
   61 ARGDGFQVIR MNKNRFYGHP EMISYLQRLG KKVEQAGLPT MLIGDIAMPG GGRFLTGHAS 120
  121 HQMGLDADIW LRMGSMSDQD ALNSDGKGLL VVDRAEQRVD ENIWNQNHFN LIKLAAQDSK 180
  181 VSRIFVNPAI KVKLCQTERQ DRSWLQKIRP WFGHDSHIHV RLTCPYGANY CENQPAIPRG 240
  241 DGCGAELYSW FEPQKPSSGA TTKKTLPPEP FLCQQVLNSP NRSEWQD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 112.0
Match: 1tzpA
Description: MEPA, inactive form without ZN in P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.579809417316389 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle