YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|52424672, gi|...
Organism: Mannheimia succiniciproducens MBEL55E
Length: 266 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52424672, gi|....

Description E-value Query
Range
Subject
Range
gi|33151930, gi|... - gi|33151930|ref|NP_873283.1| mannose-specific phosphotransferase system IIC component [Haemophilus d...
279.0 [0..1] [266..1]

Back

Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISTLQVIL VFLVSCVCGA GSILDEFQTH RPLIACTLIG LVLGDMTTGI IVGGSLELLA  60
   61 LGWMNIGAAL APDAALASVI STILVIVGGQ DISTGIAVAI PLAAAGQVLT YVVRAITVGF 120
  121 QHAADKSVED GNLARLDWIH FGALMLQAMR IAIPALIVAL TA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [163-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTDVVQTMLN AIPPVVTTGL KIAGGFIAVV GYAMVINMMR AGHLMPFFYA GFVIAAFTDF  60
   61 NLVALGVLGT IMAVIYIQIH PKYNKSQQVV VAAASNNDLD NRLD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle