YRC Public Data Repository - Protein Structure Prediction

Protein:	RS6_MANSM
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS6_MANSM.

Description	E-value	Query Range	Subject Range
RS6_HAEIN - 30S ribosomal protein S6 OS=Haemophilus influenzae GN=rpsF PE=3 SV=1 gi\|145638543, gi... - gi\|145638543\|ref\|ZP_01794152.1\| 30S ribosomal protein S6 [Haemophilus influenzae PittII], gi\|1452721... gi\|145269358, gi... - gi\|145637412\|ref\|ZP_01793071.1\| 30S ribosomal protein S6 [Haemophilus influenzae PittHH], gi\|1452693... gi\|145267378, gi... - gi\|145635372\|ref\|ZP_01791074.1\| 30S ribosomal protein S6 [Haemophilus influenzae PittAA], gi\|1452673... gi\|144985870, gi... - gi\|145633501\|ref\|ZP_01789230.1\| 30S ribosomal protein S6 [Haemophilus influenzae 3655], gi\|144985870... gi\|145275106, gi... - gi\|145640520\|ref\|ZP_01796104.1\| 30S ribosomal protein S6 [Haemophilus influenzae R3021], gi\|14563027... gi\|145628928, gi... - gi\|145628928\|ref\|ZP_01784728.1\| 30S ribosomal protein S6 [Haemophilus influenzae 22.1-21], gi\|144979... gi\|42629995 - gi\|42629995\|ref\|ZP_00155540.1\| COG0360: Ribosomal protein S6 [Haemophilus influenzae R2846] gi\|53733320 - gi\|53733320\|ref\|ZP_00156367.2\| COG0360: Ribosomal protein S6 [Haemophilus influenzae R2866] RS6_HAEIN - 30S ribosomal protein S6 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rp... gi\|229812543, gi... - gi\|229844294\|ref\|ZP_04464434.1\| 30S ribosomal protein S6 [Haemophilus influenzae 6P18H1], gi\|2298125... RS6_HAEIG - 30S ribosomal protein S6 OS=Haemophilus influenzae (strain PittGG) GN=rpsF PE=3 SV=1 gi\|229846630, gi... - gi\|229846630\|ref\|ZP_04466738.1\| 30S ribosomal protein S6 [Haemophilus influenzae 7P49H1], gi\|2298107... gi\|145640520, gi... - gi\|145640520\|ref\|ZP_01796104.1\| 30S ribosomal protein S6 [Haemophilus influenzae R3021], gi\|14498400... RS6_HAEI8 - 30S ribosomal protein S6 OS=Haemophilus influenzae (strain 86-028NP) GN=rpsF PE=3 SV=1	171.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHYEIVFMV HPDQSEQVPG MIERYTGSVK EAGGQIHRLE DWGRRQLAYP INKLHKAHYV  60
   61 LMNVEAPQEV IDELETTFRY NDAVLRNVII RTKHAVTEAS PMVKAKDERR ASAEVENNDF 120
  121 EDAEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1p6gF
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.76170790689216	bayes_pls_golite062009
structural molecule activity	3.47672166437086	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: