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View Structure Prediction Details

Protein: gi|52306545, gi|...
Organism: Mannheimia succiniciproducens MBEL55E
Length: 253 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52306545, gi|....

Description E-value Query
Range
Subject
Range
gi|48869021, gi|... - gi|68249231|ref|YP_248343.1| UDP-glucose--lipooligosaccharide glucosyltransferase [Haemophilus influ...
174.0 [0..1] [253..1]

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Predicted Domain #1
Region A:
Residues: [1-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTISVAMIV KNEAQDLAKC LDTVKDWVDE IVILDSGSTD ETREIALSYG AKFYTNTDWQ  60
   61 GFGKQRQLAQ QYVTCDYVLW LDADERVTPE LRHSIQSAVE KNEDSTLYQI PRLSEVFGRK 120
  121 IRHSGWYPDY VLRLYKTHVA QYGDELVHEK VHYPVNVKVE KLTGDLEHYT YKDVYHYLIK 180
  181 SAGYGKAWAE QKAAAGKSTS LFNAVTHALG CFVKMYILRA GFLDGKQGLL LAILSANSTF 240
  241 NKYADLWVRT KTK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.69897
Match: 2ffuA
Description: Crystal Structure of Human ppGalNAcT-2 complexed with UDP and EA2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle