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View Structure Prediction Details

Protein: gi|52306511, gi|...
Organism: Mannheimia succiniciproducens MBEL55E
Length: 176 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52306511, gi|....

Description E-value Query
Range
Subject
Range
gi|77809323, gi|... - gi|77815675|ref|ZP_00814899.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella p...
193.0 [0..3] [165..4]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQQISFDEK MMNRALFLAD KAEALGEIPV GAVLVDERGN IIGEGWNLSI VNSDPTAHAE  60
   61 IIALRNAAQK IQNYRLLNTT LYVTLEPCTM CAGAILHSRI KRLVFGASDY KTGAVGSRFH 120
  121 FFEDYKMNHG VEITSGVLQD QCSQKLSRFF QKRREQKKQQ KATALLQHPR LNSSEK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.39794
Match: 1z3aA
Description: Crystal structure of tRNA adenosine deaminase TadA from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cytidine deaminase activity 3.32627437235191 bayes_pls_golite062009
deaminase activity 2.98296848979171 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 2.68002626337065 bayes_pls_golite062009
catalytic activity 2.07800438828306 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.99877479616498 bayes_pls_golite062009
phosphoribosylaminoimidazolecarboxamide formyltransferase activity 1.04494328925818 bayes_pls_golite062009
cyclohydrolase activity 0.76434031175481 bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity 0.65218322387102 bayes_pls_golite062009
IMP cyclohydrolase activity 0.49957918476182 bayes_pls_golite062009
glycine hydroxymethyltransferase activity 0.3349337641885 bayes_pls_golite062009
hydrolase activity 0.229082963211895 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle