YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52424374, gi\|...
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52424374, gi|....

Description	E-value	Query Range	Subject Range
gi\|15603181, gi\|... - gi\|15603181\|ref\|NP_246254.1\| hypothetical protein PM1316 [Pasteurella multocida subsp. multocida str...	193.0	[0..1]	[114..1]
gi\|126208846, gi... - gi\|126208846\|ref\|YP_001054071.1\| hypothetical protein APL_1382 [Actinobacillus pleuropneumoniae L20]... gi\|32035442 - gi\|32035442\|ref\|ZP_00135408.1\| COG3171: Uncharacterized protein conserved in bacteria [Actinobacillu... gi\|190150702, gi... - gi\|190150702\|ref\|YP_001969227.1\| hypothetical protein APP7_1433 [Actinobacillus pleuropneumoniae ser...	192.0	[0..1]	[112..1]
Y341_HAEIN, YGGL... - (P44649) Protein HI0341, Uncharacterized protein HI_0341 OS=Haemophilus influenzae GN=HI_0341 PE=1 S... Y341_HAEIN - Uncharacterized protein HI_0341 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd...	190.0	[0..1]	[112..1]
gi\|113461797, gi... - gi\|113461797\|ref\|YP_719866.1\| hypothetical protein HS_1661 [Haemophilus somnus 129PT], gi\|112823840\|...	189.0	[0..1]	[112..1]
gi\|170718110, gi... - gi\|32028616\|ref\|ZP_00131772.1\| COG3171: Uncharacterized protein conserved in bacteria [Haemophilus s...	189.0	[0..1]	[112..1]
gi\|42629803 - gi\|42629803\|ref\|ZP_00155348.1\| COG3171: Uncharacterized protein conserved in bacteria [Haemophilus i...	187.0	[0..1]	[112..1]
gi\|68057145, gi\|... - gi\|68248946\|ref\|YP_248058.1\| hypothetical protein NTHI0460 [Haemophilus influenzae 86-028NP], gi\|680... gi\|144982950 - gi\|144982950\|gb\|EDJ90459.1\| hypothetical protein CGSHi22421_06162 [Haemophilus influenzae R3021] gi\|42630641 - gi\|42630641\|ref\|ZP_00156180.1\| COG3171: Uncharacterized protein conserved in bacteria [Haemophilus i... gi\|148827487, gi... - gi\|148827487\|ref\|YP_001292240.1\| hypothetical protein CGSHiGG_04510 [Haemophilus influenzae PittGG],... gi\|145638748, gi... - gi\|145638748\|ref\|ZP_01794357.1\| hypothetical protein CGSHiII_08536 [Haemophilus influenzae PittII], ... gi\|145270555, gi... - gi\|145636390\|ref\|ZP_01792059.1\| hypothetical protein CGSHiHH_07931 [Haemophilus influenzae PittHH], ... gi\|145631413 - gi\|145631413\|ref\|ZP_01787183.1\| hypothetical protein CGSHi22421_06162 [Haemophilus influenzae 22.4-2...	187.0	[0..1]	[113..1]
gi\|33148161, gi\|... - gi\|33151939\|ref\|NP_873292.1\| hypothetical protein HD0776 [Haemophilus ducreyi 35000HP], gi\|33148161\|...	187.0	[0..1]	[112..1]
gi\|77974452 - gi\|77974452\|ref\|ZP_00829992.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia fred...	182.0	[0..1]	[108..1]
gi\|77976487 - gi\|77976487\|ref\|ZP_00831973.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia inte...	182.0	[0..1]	[108..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKRNQRQR KKMHLAEFQE LGFLVNWQFA ENTAIEQVDE VVDRFIRDVI QPNGLAYEGS  60
   61 GYLQWEGLVC LEKLGKCDES HRELVKNWLE SNGLQQVEVS ALFDIWWDYP VKEA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	72.167491
Match:	PF04320.5
Description:	No description for PF04320.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.908	N/A	N/A	a.36.1	Signal peptide-binding domain
View	Download	0.908	N/A	N/A	a.36.1	Signal peptide-binding domain
View	Download	0.786	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.786	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.659	N/A	N/A	a.1.1	Globin-like
View	Download	0.655	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.655	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.647	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.647	N/A	N/A	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits