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View Structure Prediction Details

Protein: RL10_MANSM
Organism: Mannheimia succiniciproducens MBEL55E
Length: 163 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL10_MANSM.

Description E-value Query
Range
Subject
Range
RL10_ACTSZ - 50S ribosomal protein L10 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplJ PE=3 SV=...
186.0 [0..1] [163..1]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNLQDKQA IVAEVNEAAK GALSAVIADS RGVTVDKMTE LRKTAREAGV SMRVVRNTLL  60
   61 RRAVEGTEFE CLTDTFTGPT LIAFSNEHPG AAARLFKEFA KANDKFEIKG AAFEGKIQDV 120
  121 DFLATLPTYD EAIARLMGTI KEAAAGKLVR TFAALRDKLQ EAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.39794
Match: 1zavA
Description: Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.21399440705185 bayes_pls_golite062009
structural molecule activity 8.64272477066313 bayes_pls_golite062009
binding 0.883379158418688 bayes_pls_golite062009
protein binding 0.184314459922274 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle