YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: tpk-1
Organism: Caenorhabditis elegans
Length: 228 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tpk-1.

Description E-value Query
Range
Subject
Range
gi|83755026, gi|... - gi|83755027|pdb|2F17|B Chain B, Mouse Thiamin Pyrophosphokinase In A Ternary Complex With Pyrithiami...
247.0 [0..1] [219..21]

Back

Predicted Domain #1
Region A:
Residues: [1-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKLKPFEI LEDSCASVCI WLNGEPTAIS NRAENLWNKA KYRVATDGAV NEILKRKSFV  60
   61 EWPHIICGDF DSINKQIDTK NAKVVHLPDQ DYTDLSKSVQ WCLEQKTLTS WEFENIVVLG 120
  121 GLNGRFDHTM STLSSLIRFV DSQTPGDSNL DVNLEMTTKM CGIIPIVQKE TIVSSIGLKY 180
  181 EMENLALEFG KLISTSNEVT TSQVFLKSSS SLIFSIELEN WVYKLDSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.69897
Match: 1ig3A
Description: Thiamin pyrophosphokinase, substrate-binding domain; Thiamin pyrophosphokinase, catalytic domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle