YRC Public Data Repository - Protein Structure Prediction

Protein:	TXND8_RAT
Organism:	Rattus norvegicus
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TXND8_RAT.

Description	E-value	Query Range	Subject Range
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	139.0	[0..2]	[106..43]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	137.0	[0..2]	[106..43]
gi\|90335315, gi\|... - gi\|90420587\|ref\|ZP_01228494.1\| thioredoxin [Aurantimonas sp. SI85-9A1], gi\|90335315\|gb\|EAS49068.1\| t... gi\|90335315, gi\|... - gi\|90420587\|ref\|ZP_01228494.1\| thioredoxin [Aurantimonas sp. SI85-9A1], gi\|90335315\|gb\|EAS49068.1\| t...	137.0	[0..1]	[104..1]
gi\|148568063, gi... - gi\|148655953\|ref\|YP_001276158.1\| thioredoxin [Roseiflexus sp. RS-1], gi\|148568063\|gb\|ABQ90208.1\| thi...	137.0	[0..2]	[115..12]
gi\|25521215 - pir\|\|G98272 probable thioredoxin PA4061 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gi\|15891248, gi\|... - gi\|15891248\|ref\|NP_356920.1\| hypothetical protein AGR_L_2276 [Agrobacterium tumefaciens str. C58], g...	136.0	[0..2]	[125..43]
gi\|121608517, gi... - gi\|121608517\|ref\|YP_996324.1\| thioredoxin [Verminephrobacter eiseniae EF01-2], gi\|121553157\|gb\|ABM57...	136.0	[0..2]	[126..1]
gi\|15076210 - gi\|15076210\|emb\|CAC47763.1\| Putative thioredoxin protein [Sinorhizobium meliloti 1021] gi\|15966937 - gi\|15966937\|ref\|NP_387290.1\| putative thioredoxin protein [Sinorhizobium meliloti 1021]	136.0	[0..1]	[125..41]
gi\|160872103, gi... - gi\|94494048\|ref\|ZP_01301251.1\| hypothetical protein Rgryl_01000578 [Rickettsiella grylli], gi\|160872...	135.0	[0..3]	[112..6]
gi\|32477354, gi\|... - gi\|32477354\|ref\|NP_870348.1\| thioredoxin 1 [Rhodopirellula baltica SH 1], gi\|32447905\|emb\|CAD77425.1...	135.0	[0..2]	[106..5]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQKIKSMRE FKELLGAAGN RLVVVEFSAQ WCGPCKMIAP AFQAMSLQYR NVMFAQVDVD  60
   61 SSQELTEHCS IQVVPTFQMF KHSRKVTPFS RLKRILCCFR SGPGSKKIFE FQGADIEKLE 120
  121 EKIQELM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.221849
Match:	1m7tA
Description:	Thioredoxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits