YRC Public Data Repository - Protein Structure Prediction

Protein:	BRE1A_ARATH
Organism:	Arabidopsis thaliana
Length:	878 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BRE1A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	417.0	[0..2]	[865..1897]
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1	367.0	[0..2]	[865..895]
MYH4_MOUSE - Myosin-4 OS=Mus musculus GN=Myh4 PE=2 SV=1	365.0	[0..2]	[865..897]
MYH4_RAT - Myosin-4 OS=Rattus norvegicus GN=Myh4 PE=1 SV=1	365.0	[0..2]	[865..897]
MYH1_BOVIN - Myosin-1 OS=Bos taurus GN=MYH1 PE=2 SV=2	363.0	[0..2]	[865..896]
gi\|109113271 - gi\|109113271\|ref\|XP_001113877.1\| PREDICTED: myosin, heavy polypeptide 2, skeletal muscle, adult [Mac...	362.0	[0..2]	[865..897]
MYH2_HORSE - Myosin-2 OS=Equus caballus GN=MYH2 PE=2 SV=1	362.0	[0..2]	[865..895]
MYH2 - myosin, heavy chain 2, skeletal muscle, adult	362.0	[0..2]	[865..899]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ  60
   61 VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES CSVRVSDSSS GAHRFVNKED 120
  121 GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL 180
  181 KDELYPTVLR TNLGKDLCGQ LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK 240
  241 VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [277-485]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGAFFPVLSL GNKLATSDRE RDKQRDLQDM ETVLKELTVL ASGRLQQLKN LHEERTKMLG  60
   61 KMSNLQNKSK SVRCISSSQA CLSLKDQLEK SKEAVFQYMA LLEKLQVEKD SIVWKEREIN 120
  121 IKNELGDVSR KTSAVTDSRM ASLDSEIQKQ LDEKMRIKTR LGNISRERGR KEIFADMKAL 180
  181 ISSFPEEMSS MRSQLNNYKE TAGGIHSLR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [486-878]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADVQSLSGVL CRKTKEYEAL QLRSADYASQ LGDLNATVCD LKNSHEELKL FLDMYKREST  60
   61 DARDIAEAKE QEYRAWAHVQ SLKSSLDEQN LELRVKAANE AEAVSQQMLA AAEAEIADLR 120
  121 QKMDDCKRDV AKHSDILKSK HEEHGTYLSE IQTIGSAYED IVPQNQQLLL QVTERDDYNI 180
  181 KLFLEGITSR QMQDTLLIDK YIMDKDIQQG SAYASFLSKK SSRIEDQLRF CTDQFQKLAE 240
  241 DKYQKSVSLE NLQKKRADIG NGLEQARSRL EESHSKVEQS RLDYGALELE LEIERFNRRR 300
  301 IEEEMEIAKK KVSRLRSLIE GSSAIQKLRQ ELSEFKEILK CKACNDRPKE VVITKCYHLF 360
  361 CNPCVQKLTG TRQKKCPTCS ASFGPNDIKP IYI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.39794
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits