| Protein: | RER6_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 745 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RER6_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
826.0 | [0..1] | [745..1] |
|
|
723.0 | [0..59] | [733..77] |
|
|
691.0 | [0..61] | [745..41] |
|
|
389.0 | [0..424] | [708..119] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR 60
61 TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT SPAESAAPPP PPATTT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.539 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.246 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.241 | d.379.1 | Description not found. |
| View | Download | 0.227 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.222 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.214 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.204 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
|
Region A: Residues: [117-415] |
1 11 21 31 41 51
| | | | | |
1 PSPPPPVNKE ETITSRIYDA TAIGEPMAMG KDKKKVWEKL LNARVVYLGE AEQVPTKDDK 60
61 ELELEIVRNL RKRCVESERQ ISVALEAFPL DLQDQLNQYM DKRMDGETLK SYVTHWPAQR 120
121 WQEYEPLLSY CRDNSVRLIA CGTPLKVLRT VQAEGIRGLS KSERKLYTPP AGSGFISGFS 180
181 SFSRRSTFDM SLPTQIVPFG PSSYLSAQAR VVEDHTMSQV ILQAVADGGG TGLLLVVTGA 240
241 SHVEYGSRGT GLPARISRKF PKKNQVVVLL DPERQFLRRE GETPVADFLW YSAARPCSR
|
| Detection Method: | |
| Confidence: | 49.69897 |
| Match: | 2g5gX |
| Description: | No description for 2g5gX was found. |
|
Region A: Residues: [416-483] |
1 11 21 31 41 51
| | | | | |
1 NCFDRAEIAR VMNAAGRRRD ALPPDIQNGL DLGLVSPEVL QNLFDLEQYP LISELTQRFQ 60
61 GFRERLLA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.802 | N/A | N/A | a.182.1 | GatB/YqeY domain |
| View | Download | 0.714 | N/A | N/A | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.714 | N/A | N/A | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.698 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.698 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.639 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.639 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.593 | N/A | N/A | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.593 | N/A | N/A | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.519 | N/A | N/A | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
|
Region A: Residues: [484-745] |
1 11 21 31 41 51
| | | | | |
1 DPKFLNRLAI EEAISITTTL IAQYEKRKEN FFEEIDYVIT DTVRGSVVDF FTVWLPAPTL 60
61 SFLSYADETT GPDSIDALRG LLGSIPDNAF QKSLAGREWN LNLRIASVIV GGLKLAGVGV 120
121 VSSFAAVGAS NALNIARKVI KPELVVAEKP KRSPLLKTAM VYGGFLGTSA NLRYQIIAGL 180
181 IEHRLSDELS SQPLLVNAIS FVVRTLNSYF GTQQWIDLAR STGLQTQKSI PASKEISEAL 240
241 EEPTVECDTT TEEESIDKLN NQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
