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View Structure Prediction Details

Protein: CCB4_ARATH
Organism: Arabidopsis thaliana
Length: 297 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCB4_ARATH.

Description E-value Query
Range
Subject
Range
gi|25404238, gi|... - gi|5080827|gb|AAD39336.1|AC007258_25 Hypothetical protein [Arabidopsis thaliana], pir||E96622 hypoth...
437.0 [0..1] [297..1]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEARIILLRI QIPWSANRQF SHPPLDFPRF IRASSSSTSQ KPKTYEGPKP RKNLVADFIS  60
   61 KNDDLVRSLP IYVGGASLLA VLFNRTVSGI APVADASSSQ SRADLLALGL AVTNLLTGLV 120
  121 WLSIRPKSIT PVNPKGVECK VVESDLPASM VSELLWAWES LKVATCCKSL VIVYN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.892 N/A N/A a.24.14 FAT domain of focal adhesion kinase
View Download 0.802 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.767 N/A N/A a.25.1 Ferritin-like
View Download 0.651 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.564 N/A N/A a.47.2 t-snare proteins

Predicted Domain #2
Region A:
Residues: [176-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GICLIQIGMV AESPEDKKTV IVKTDKLMQG SVYRGVMKSK AQSYLANLSL YPGRSELPFL  60
   61 PANTQAVILQ PLGDKGIAVI GGNTIRGFTS SDQAWISSIG EKLDATLGRY FVDSDEISRV 120
  121 TV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle