YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15646205
Organism:	Helicobacter pylori 26695
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15646205.

Description	E-value	Query Range	Subject Range
gi\|7465057 - gi\|7465057\|pir\|\|B71800 hypothetical protein jhp1494 - Helicobacter pylori (strain J99) YF88_HELPJ - UPF0174 protein jhp_1494 OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=jhp_1494 PE=3 SV=1	296.0	[0..1]	[207..41]
gi\|107836198, gi... - gi\|108562425\|ref\|YP_626741.1\| hypothetical protein HPAG1_1536 [Helicobacter pylori HPAG1], gi\|107836...	296.0	[0..1]	[207..41]
Y1588_HELPY - UPF0174 protein HP_1588 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_1588 PE=3 SV=1 YF88_HELPY, Y158... - (O26107) Hypothetical UPF0174 protein HP1588, UPF0174 protein HP_1588 OS=Helicobacter pylori GN=HP_1...	294.0	[0..1]	[207..41]
gi\|23467301, gi\|... - gi\|23467301\|ref\|ZP_00122884.1\| COG4735: Uncharacterized protein conserved in bacteria [Haemophilus s...	291.0	[0..1]	[203..41]
Y1587_HELPY - UPF0174 protein HP_1587 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_1587 PE=3 SV=2 Y1587_HELPY, YF8... - (O26106) Hypothetical UPF0174 protein HP1587, UPF0174 protein HP_1587 OS=Helicobacter pylori GN=HP_1...	286.0	[0..1]	[200..5]
gi\|254228164, gi... - gi\|75857021\|ref\|ZP_00764641.1\| COG4735: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex...	249.0	[0..1]	[197..41]
gi\|53727041, gi\|... - gi\|53727041\|ref\|ZP_00140697.2\| COG4735: Uncharacterized protein conserved in bacteria [Pseudomonas a...	225.0	[0..1]	[200..36]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSTEYQRY GYDYAKYPRR IAEELQRYGG NSFMNFFRDE GVLYKEILCD ACDHLKVNYN  60
   61 KKSDTTLIEE NMLSSILQKS LEKMSDEEIR ELCDELGVKN TNKLGKQALS TAALTLFRMG 120
  121 GFKSYQLALI VANAVIKAIF QRGLSLGANA ALTRGLSILT GPIGWIITGV WTAIDIAGPA 180
  181 YRVTIPACIL VATLRLKAQA NEIKNIL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	125.769551
Match:	PF03667.4
Description:	No description for PF03667.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits