YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7429271
Organism:	Helicobacter pylori
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7429271.

Description	E-value	Query Range	Subject Range
gi\|108563848, gi... - gi\|108563848\|ref\|YP_628164.1\| hemolysin domain-containing protein [Helicobacter pylori HPAG1], gi\|10...	327.0	[0..1]	[441..1]
gi\|7444893 - pir\|\|B71816 hypothetical protein jhp1383 - Helicobacter pylori (strain J99) gi\|15612448, gi\|... - gi\|4155992\|gb\|AAD06954.1\| putative [Helicobacter pylori J99], gi\|15612448\|ref\|NP_224101.1\| hypotheti...	326.0	[0..9]	[449..1]
gi\|109948217, gi... - gi\|109948217\|ref\|YP_665445.1\| hemolysin domain-containing protein [Helicobacter acinonychis str. She...	319.0	[0..9]	[447..1]
gi\|17134355, gi\|... - gi\|17232708\|ref\|NP_489256.1\| hypothetical protein alr5216 [Nostoc sp. PCC 7120], gi\|17134355\|dbj\|BAB... gi\|25302934 - pir\|\|AH2457 hypothetical protein alr5216 [imported] - Nostoc sp. (strain PCC 7120)	317.0	[0..12]	[448..2]
gi\|83575009, gi\|... - gi\|83592095\|ref\|YP_425847.1\| hypothetical protein Rru_A0756 [Rhodospirillum rubrum ATCC 11170], gi\|8... gi\|48763001 - ref\|ZP_00267558.1\| COG1253: Hemolysins and related proteins containing CBS domains [Rhodospirillum r...	312.0	[0..16]	[448..4]
gi\|75702703, gi\|... - gi\|75908978\|ref\|YP_323274.1\| hypothetical protein Ava_2766 [Anabaena variabilis ATCC 29413], gi\|7570...	306.0	[0..28]	[448..18]
gi\|89199894, gi\|... - gi\|89199894\|ref\|ZP_01178651.1\| CBS:Protein of unknown function DUF21:Transporter-associated region [...	303.0	[0..15]	[449..3]
gi\|57505732, gi\|... - gi\|57505732\|ref\|ZP_00371658.1\| transporter, putative [Campylobacter upsaliensis RM3195], gi\|57016005...	303.0	[0..1]	[447..1]
gi\|147920421, gi... - gi\|147920421\|ref\|YP_685804.1\| hypothetical protein RCIX1155 [uncultured methanogenic archaeon RC-I],...	303.0	[0..14]	[448..4]
gi\|89155575, gi\|... - gi\|89206454\|ref\|ZP_01185012.1\| CBS:Protein of unknown function DUF21:Transporter-associated region [...	302.0	[0..15]	[449..3]

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Predicted Domain #1

Region A:
Residues: [1-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRNQGAYLD PSESILMLMV AFLLVLLNAF FVLSEFALVK VRKTRLEELV KIGNSNAKLA  60
   61 LKMSQRLDTY LSATQLGITL SSLALGWVGE PAIAKLLAAL FESMDLRENP IFIHSMSVVI 120
  121 AFLSITFLHV VLGEIVPKSL AIAKSEKATL FAARPLHVFW VVFYPVVRLF DVIAHFFLKK 180
  181 MGINPKEHDG THSEEELKII VGESLREGII DSVEGEIIKN AXDFSDTSAK EIMTPRKDMV 240
  241 CLDEENSYEE NIDIVLKGHF TRYPYCKGSK DNIIGMVHIR DLLSRSIFTP KMHDFNQIVR 300
  301 KMIIVPESAS ISQILIKMKK EQIHTALVID EYGGTAGLLT MEDIIEEIMG EISDEYDLKQ 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.09691
Match:	2ooxG
Description:	No description for 2ooxG was found.

Predicted Domain #2

Region A:
Residues: [361-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGINKLEEGV FELEGMLDLE SVEEALHIEF DKECEQVTLG GYVFSLLERM PMEGDTIVSH  60
   61 GYSFEVLSVD GARIKRLKAV KQDQGENEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1vrdA
Description:	Crystal structure of Inosine-5'-monophosphate dehydrogenase (TM1347) from THERMOTOGA MARITIMA at 2.18 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits