YRC Public Data Repository - Protein Structure Prediction

Protein:	EFG_HELPY
Organism:	Helicobacter pylori
Length:	692 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EFG_HELPY.

Description	E-value	Query Range	Subject Range
EFG_BACHD - Elongation factor G OS=Bacillus halodurans GN=fusA PE=3 SV=2 EFG_BACHD - Elongation factor G OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 /...	755.0	[0..1]	[692..1]
EFG_HELPJ - Elongation factor G OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=fusA PE=3 SV=3 gi\|7443440 - pir\|\|G71847 translation elongation factor EF-G (ef-g) - Helicobacter pylori (strain J99)	753.0	[0..1]	[692..1]
EFG_HELPH - Elongation factor G OS=Helicobacter pylori (strain HPAG1) GN=fusA PE=3 SV=1	753.0	[0..1]	[692..1]
EFG_HELAH - Elongation factor G OS=Helicobacter acinonychis (strain Sheeba) GN=fusA PE=3 SV=1	753.0	[0..1]	[692..1]
gi\|4512401, gi\|1... - gi\|4512401\|dbj\|BAA75268.1\| fus homologue (identity of 87% to B. subtilis ) [Bacillus halodurans], pi...	752.0	[0..1]	[692..1]
EFG_BACLD - Elongation factor G OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / ...	750.0	[0..1]	[692..1]
EFG1_GEOMG - Elongation factor G 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=fusA1 P...	749.0	[0..1]	[692..1]
EFG_GEOKA - Elongation factor G OS=Geobacillus kaustophilus GN=fusA PE=3 SV=1 EFG_GEOKA - Elongation factor G OS=Geobacillus kaustophilus (strain HTA426) GN=fusA PE=3 SV=1	748.0	[0..1]	[692..1]
gi\|10279668 - gi\|10279668\|emb\|CAC09927.1\| translation elongation factor G, EF-G [Geobacillus stearothermophilus]	748.0	[0..1]	[692..1]
gi\|16077180, gi\|... - gi\|2632379\|emb\|CAB11888.1\| elongation factor G [Bacillus subtilis subsp. subtilis str. 168], gi\|1607... EFG_BACSU - Elongation factor G OS=Bacillus subtilis GN=fusA PE=1 SV=2	748.0	[0..1]	[692..1]

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Predicted Domain #1

Region A:
Residues: [1-692]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKTPLNRI RNIGIAAHID AGKTTTSERI LFYTGVSHKI GEVHDGAATM DWMEQEKERG  60
   61 ITITSAATTC FWKDHQINLI DTPGHVDFTI EVERSMRVLD GAVSVFCSVG GVQPQSETVW 120
  121 RQANKYGVPR IVFVNKMDRI GANFYNVENQ IKLRLKANPV PINIPIGAED TFIGVIDLVQ 180
  181 MKAIVWNNET MGAKYDVEEI PSDLLEKAKE YREKLVEAVA EQDEALMEKY LGGEELSIEE 240
  241 IKKGIKAGCL NMSLVPMLCG SSFKNKGVQT LLDAVIDYLP APTEVVDIKG IDPKTEEEVF 300
  301 VKSSDDGEFA GLAFKIMTDP FVGQLTFVRV YRGKLESGSY VYNSTKDKKE RVGRLLKMHS 360
  361 NKREDIKEVY AGEICAFVGL KDTLTGDTLC DEKNAVVLER MEFPEPVIHI AVEPKTKADQ 420
  421 EKMGVALGKL AEEDPSFRVM TQEETGQTLI GGMGELHLEI IVDRLKREFK VEAEIGQPQV 480
  481 AFRETIRSSV SKEHKYAKQS GGRGQYGHVF IKLEPKEPGS GYEFVNEISG GVIPKEYIPA 540
  541 VDKGIQEAMQ NGVLAGYPVV DFKVTLYDGS YHDVDSSEMA FKIAGSMAFK EASRAANPVL 600
  601 LEPMMKVEVE VPEEYMGDVI GDLNRRRGQI NSMDDRLGLK IVNAFVPLVE MFGYSTDLRS 660
  661 ATQGRGTYSM EFDHYGEVPS NIAKEIVEKR KG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1darA
Description:	ELONGATION FACTOR G IN COMPLEX WITH GDP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits