YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15645523, gi\|...
Organism:	Helicobacter pylori 26695
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15645523, gi|....

Description	E-value	Query Range	Subject Range
gi\|7465211 - pir\|\|F71881 probable flagellar biosynthesis protein - Helicobacter pylori (strain J99) gi\|4155413, gi\|1... - gi\|4155413\|gb\|AAD06421.1\| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99], gi\|1561...	276.0	[0..1]	[296..1]
gi\|107837087, gi... - gi\|108563314\|ref\|YP_627630.1\| flagellar basal body rod modification protein [Helicobacter pylori HPA...	274.0	[0..1]	[301..1]
gi\|109947807, gi... - gi\|109947807\|ref\|YP_665035.1\| flagellar basal body rod modification protein [Helicobacter acinonychi...	270.0	[0..1]	[301..1]
gi\|32265683, gi\|... - gi\|32265683\|ref\|NP_859715.1\| flagellar basal body rod modification protein [Helicobacter hepaticus A...	230.0	[0..1]	[270..1]
gi\|39576966, gi\|... - gi\|42524756\|ref\|NP_970136.1\| basal-body rod modification protein flgD [Bdellovibrio bacteriovorus HD...	203.0	[0..5]	[295..45]
gi\|34483785 - gi\|34483785\|emb\|CAE10782.1\| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes] gi\|34558067 - gi\|34558067\|ref\|NP_907882.1\| flagellar basal body rod modification protein [Wolinella succinogenes D...	183.0	[0..23]	[269..22]
gi\|76812017, gi\|... - gi\|76812017\|ref\|YP_331877.1\| basal-body rod modification protein FlgD [Burkholderia pseudomallei 171...	179.0	[0..2]	[272..220]
gi\|23474990, gi\|... - gi\|78356755\|ref\|YP_388204.1\| basal-body rod modification protein FlgD [Desulfovibrio desulfuricans s...	173.0	[0..22]	[271..22]
gi\|150964786, gi... - gi\|94415937\|ref\|ZP_01295769.1\| hypothetical protein PaerP_01002266 [Pseudomonas aeruginosa PA7], gi\|...	171.0	[0..1]	[268..1]
gi\|36785269, gi\|... - gi\|37525840\|ref\|NP_929184.1\| flagellar basal body rod modification protein [Photorhabdus luminescens...	171.0	[0..1]	[266..1]

Back

Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIDLAEVTG AKAAQERKKE QPTIANGLDK NAFMKLFLEQ LKNQDPTAPM ETDKIITQTA  60
   61 QLTQVEMQEE NKKTMQEVAS AMKSNKETNE SLKDFQGALK DTMENLNKGM DDSLKANNAL 120
  121 REVTALNSVS MIGKIAETDV SGANFDGNNK LSFSLFFDEK IDASKGVPAI QILNENNELV 180
  181 KTIPLKDYNG QKGYINFEWD GTNEKGEKVP KGNYKIKAEY NLDSHSKQYL QTRIGRGEVE 240
  241 SVIFDKGKPM LRMGEMVLPI DSAIEFYQPD QKPLEQKLSD QKPIDQKPLD QKPQTPPKET 300
  301 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1xf1A
Description:	Structure of C5a peptidase- a key virulence factor from Streptococcus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits