YRC Public Data Repository - Protein Structure Prediction

Protein:	METB_HELPY
Organism:	Helicobacter pylori 26695
Length:	380 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for METB_HELPY.

Description	E-value	Query Range	Subject Range
gi\|107836304, gi... - gi\|108562531\|ref\|YP_626847.1\| cystathionine gamma-synthase/cystathionine beta-lyase [Helicobacter py...	359.0	[0..1]	[380..1]
METB_HELPX - Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1	358.0	[0..1]	[379..1]
gi\|75910353, gi\|... - gi\|75910353\|ref\|YP_324649.1\| cystathionine gamma-lyase [Anabaena variabilis ATCC 29413], gi\|75704078...	352.0	[0..1]	[376..1]
gi\|69249113, gi\|... - gi\|69249113\|ref\|ZP_00604875.1\| Cystathionine gamma-synthase [Enterococcus faecium DO], gi\|68194276\|g... gi\|48824003 - ref\|ZP_00285446.1\| COG0626: Cystathionine beta-lyases/cystathionine gamma-synthases [Enterococcus fa...	352.0	[0..1]	[379..1]
gi\|7437091 - pir\|\|D71973 probable cystathionine gamma-synthase - Helicobacter pylori (strain J99) METB_HELPJ - Cystathionine gamma-synthase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=metB PE=3 SV=1	352.0	[0..1]	[379..1]
gi\|52786587, gi\|... - gi\|52786587\|ref\|YP_092416.1\| cystathionine beta-lyase [Bacillus licheniformis ATCC 14580], gi\|523490...	351.0	[0..1]	[377..1]
gi\|109947959, gi... - gi\|109947959\|ref\|YP_665187.1\| cystathionine gamma-synthase/cystathionine beta-lyase [Helicobacter ac...	351.0	[0..1]	[380..1]
gi\|89078970, gi\|... - gi\|89091218\|ref\|ZP_01164237.1\| Cystathionine gamma-synthase [Lactobacillus reuteri JCM 1112], gi\|890... gi\|227532677, gi... - gi\|227532677\|ref\|ZP_03962726.1\| cystathionine gamma-lyase [Lactobacillus reuteri MM4-1A], gi\|2271927... gi\|227363515, gi... - gi\|227363515\|ref\|ZP_03847635.1\| cystathionine gamma-lyase [Lactobacillus reuteri MM2-3], gi\|22707145...	350.0	[0..1]	[379..1]
gi\|9929259 - gi\|9929259\|emb\|CAC05298.1\| cystathionine beta-lyase [Lactobacillus reuteri]	349.0	[0..1]	[379..1]
gi\|90590715, gi\|... - gi\|90590715\|ref\|ZP_01246361.1\| Cystathionine gamma-synthase [Flavobacterium johnsoniae UW101], gi\|90...	349.0	[0..1]	[377..1]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMQTKLIHG GISEDATTGA VSVPIYQTST YRQDAIGRHK GYEYSRSGNP TRFALEELIA  60
   61 DLEGGVKGFA FASGLAGIHA VFSLLQSGDH VLLGDDVYGG TFRLFNQVLV KNGLSCTIID 120
  121 TSDISQIKKA IKPNTKALYL ETPSNPLLKI TDLAQCASVA KDHGLLTIVD NTFATPYYQN 180
  181 PLLLGADIVA HSGTKYLGGH SDVVAGLVTT NNEALAQEIA FFQNAIGGVL GPQDSWLLQR 240
  241 GIKTLGLRME AHQKNALCVA EFLEKHPKVE RVYYPGLPTH PNYELAKKQM RGFSGMLSFT 300
  301 LKNDSEAVAF VESLKLFILG ESLGGVESLV GIPAFMTHAC IPKTQREAAG IRDGLVRLSV 360
  361 GIEHEQDLLE DLEQAFAKIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.30103
Match:	2nmpA
Description:	No description for 2nmpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits