YRC Public Data Repository - Protein Structure Prediction

Protein:	RL31_HAEDU
Organism:	Haemophilus ducreyi 35000HP
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL31_HAEDU.

Description	E-value	Query Range	Subject Range
RL31_HISS2 - 50S ribosomal protein L31 OS=Histophilus somni (strain 2336) GN=rpmE PE=3 SV=1	120.0	[0..1]	[70..1]
gi\|113461613, gi... - gi\|113461613\|ref\|YP_719682.1\| 50S ribosomal protein L31P [Haemophilus somnus 129PT], gi\|112823656\|gb...	119.0	[0..1]	[70..8]
RL31_PASMU - 50S ribosomal protein L31 OS=Pasteurella multocida GN=rpmE PE=3 SV=1 RL31_PASMU - 50S ribosomal protein L31 OS=Pasteurella multocida (strain Pm70) GN=rpmE PE=3 SV=1	118.0	[0..1]	[70..1]
RL31_ACTSZ - 50S ribosomal protein L31 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpmE PE=3 SV=...	118.0	[0..1]	[70..1]
gi\|62182555, gi\|... - gi\|62182555\|ref\|YP_218972.1\| 50S ribosomal protein L31 [Salmonella enterica subsp. enterica serovar ...	117.0	[0..1]	[70..34]
RL31_ACTPJ - 50S ribosomal protein L31 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpmE PE=3 S... RL31_ACTP7 - 50S ribosomal protein L31 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpmE PE=3 S... RL31_ACTP2 - 50S ribosomal protein L31 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpmE PE=3 S... gi\|32034001 - gi\|32034001\|ref\|ZP_00134257.1\| COG0254: Ribosomal protein L31 [Actinobacillus pleuropneumoniae serov...	117.0	[0..1]	[70..1]
RL31_HAEI8 - 50S ribosomal protein L31 OS=Haemophilus influenzae (strain 86-028NP) GN=rpmE PE=3 SV=1	117.0	[0..1]	[70..1]
RL31_MANSM - 50S ribosomal protein L31 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpmE PE=3 SV=2	117.0	[0..1]	[70..1]
gi\|114771531, gi... - gi\|114771531\|ref\|ZP_01448941.1\| 50S ribosomal subunit protein L31 [alpha proteobacterium HTCC2255], ... gi\|114771531 - gi\|114771531\|ref\|ZP_01448941.1\| 50S ribosomal subunit protein L31 [alpha proteobacterium HTCC2255] gi\|221133921 - gi\|221133921\|ref\|ZP_03560226.1\| 50S ribosomal subunit protein L31 [Glaciecola sp. HTCC2999]	117.0	[0..1]	[70..1]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQGIHPEYK EITATCSCGN VIKTRSTVEK NLNLDVCGNC HPFYTGKQRV VDTGGRVERF  60
   61 NKRFNIPSTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1vs6Z
Description:	No description for 1vs6Z was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	0.865205020833206	bayes_pls_golite062009
protein binding	0.159303137691685	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: