YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57692
Organism:	Rattus rattus
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57692.

Description	E-value	Query Range	Subject Range
gi\|50754890 - gi\|50754890\|ref\|XP_414531.1\| PREDICTED: similar to ribosomal protein L26; 60S ribosomal protein L26 ...	251.0	[0..1]	[145..133]
gi\|118097329 - gi\|118097329\|ref\|XP_414531.2\| PREDICTED: similar to ribosomal protein L26 isoform 3 [Gallus gallus] gi\|114669145 - gi\|114669145\|ref\|XP_001166961.1\| PREDICTED: similar to ribosomal protein L26 [Pan troglodytes] gi\|27672824, gi\|... - ref\|XP_213346.1\| similar to 60S ribosomal protein L26 [Rattus norvegicus], gi\|157786616\|ref\|NP_0010... gi\|126290843, gi... - gi\|126309103\|ref\|XP_001364106.1\| PREDICTED: similar to ribosomal protein L26 [Monodelphis domestica]... RL26_MOUSE - 60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=1 SV=1 gi\|187609319, gi... - gi\|73991617\|ref\|XP_850899.1\| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced gene 20... ENSOCUP000000053... - pep:novel chromosome:oryCun2:19:10915724:10920715:1 gene:ENSOCUG00000006538 transcript:ENSOCUT000000... RL26_MACFA - 60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1 gi\|67043807 - gi\|67043807\|gb\|AAY64001.1\| ribosomal protein L26 [Pelodiscus sinensis] RPL26 - ribosomal protein L26 RL26_BOVIN - 60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1 tr\|M3WES0\|M3WES0... - Ribosomal protein L26 OS=Felis catus GN=RPL26 PE=3 SV=1 gi\|149724295 - gi\|149724295\|ref\|XP_001504871.1\| PREDICTED: similar to ribosomal protein L26 [Equus caballus] ENSCJAT000000429... - null, null, null gi\|149452239 - gi\|149452239\|ref\|XP_001511684.1\| PREDICTED: similar to ribosomal protein L26 [Ornithorhynchus anatin... gi\|109113229, gi... - gi\|109113231\|ref\|XP_001113073.1\| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced gen... gi\|542168782\|ref... - PREDICTED: 60S ribosomal protein L26-like [Zonotrichia albicollis] gi\|197128180, gi... - gi\|224067443\|ref\|XP_002195826.1\| PREDICTED: putative ribosomal protein L26 variant 2 isoform 1 [Taen...	222.0	[0..1]	[145..1]
gi\|74220324 - gi\|74220324\|dbj\|BAE31338.1\| unnamed protein product [Mus musculus]	222.0	[0..1]	[145..1]
gi\|109460638, gi... - gi\|62638415\|ref\|XP_574290.1\| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced gene 20...	222.0	[0..1]	[145..1]
gi\|114654784, gi... - gi\|55641385\|ref\|XP_510169.1\| PREDICTED: similar to ribosomal protein L26 isoform 4 [Pan troglodytes]...	221.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFNPFVTSD RSKNRKRHFN APSHIRRKIM SSPLSKELRQ KYNVRSMPIR KDDEVQVVRG  60
   61 HYKGQQIGKV VQVYRKKYVI YIERVQREKA NGTTVHVGIR PSKVVITRLK LDKDRKKILE 120
  121 RKAKSRQVGK EKGKYKEETI EKMQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.30103
Match:	1s1iU
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits