YRC Public Data Repository - Protein Structure Prediction

Protein:	CYC_CANAL
Organism:	Candida albicans
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYC_CANAL.

Description	E-value	Query Range	Subject Range
CYC_CYPCA - (P00026) Cytochrome c iso-1/iso-2	155.0	[0..8]	[110..1]
gi\|229351 - gi\|229351\|prf\|\|711086A cytochrome c	154.0	[0..8]	[110..1]
CYC_DANRE - Cytochrome c OS=Danio rerio GN=cyc PE=3 SV=3	154.0	[0..8]	[110..2]
CYC_HIPAM - (P00007) Cytochrome c	153.0	[0..8]	[110..1]
CYC_SCHGR - (P00040) Cytochrome c	153.0	[0..6]	[109..3]
gi\|108879930, gi... - gi\|94468578\|gb\|ABF18138.1\| mitochondrial cytochrome c [Aedes aegypti], gi\|157106248\|ref\|XP_001649238...	152.0	[0..6]	[110..4]
gi\|4139756, gi\|1... - gi\|809143\|pdb\|1HRC\| Chain , Cytochrome C, gi\|4139756\|pdb\|1WEJ\|F Chain F, Igg1 Fab Fragment (Of E8 ...	152.0	[0..8]	[110..2]
CYC_PIG - (P62895) Cytochrome c gi\|74422781 - gi\|74422781\|gb\|ABA06541.1\| mitochondrial cytochrome c [Bubalus bubalis] CYC_BOVIN - (P62894) Cytochrome c CYC_SHEEP - (P62896) Cytochrome c gi\|65445 - pir\|\|CCPG cytochrome c [validated] - pig	152.0	[0..8]	[110..1]

Back

Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAPFEKGSE KKGATLFKTR CLQCHTVEKG GPHKVGPNLH GVFGRKSGLA EGYSYTDANK  60
   61 KKGVEWTEQT MSDYLENPKK YIPGTKMAFG GLKKPKDRND LVTYLKKATS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1akkA
Description:	SOLUTION STRUCTURE OF OXIDIZED HORSE HEART CYTOCHROME C, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits