| Protein: | CE37706 |
| Organism: | Caenorhabditis elegans |
| Length: | 569 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37706.
| Description | E-value | Query Range |
Subject Range |
|
|
285.0 | [0..1] | [569..37] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MNSFRIWRKP METRDMNTMG SSMASTSQYH QIPIQIQNQN PLPSQQIQPQ QQQQYHPPDH 60
61 VTTHNGTTTF HTTNPTKPRL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [81-169] |
1 11 21 31 41 51
| | | | | |
1 CEGSLAPGCS LAEASEQRKR EMAEQKKELA GPSSAEDYFV RKTNGRLGLT IYAHNDDGVI 60
61 RAEVRGVTSF APRCAQVGDS VVAVDSELI
|
| Detection Method: | |
| Confidence: | 0.969 |
| Match: | 1wifA |
| Description: | The solution structure of RSGI RUH-020, a PDZ domain of hypothetical protein from mouse |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.441071632281575 | bayes_pls_golite062009 |
| protein binding | 0.340478308461139 | bayes_pls_golite062009 |
|
Region A: Residues: [170-569] |
1 11 21 31 41 51
| | | | | |
1 SSVRNASDVE KLLRIGKVIH LRRKTPLTPR APSQLDATNV NKKTGCAKLA MALQELLVTE 60
61 KKYVSDLREM NEVFLCMRQV RDIMNAAIRL YKMQTSFVDS IEEAIGDMSR QDISVAQIRD 120
121 SVMRVCAVFI NKCSDFKIYA EYAAGYHLLQ HEIKNKKELL SKLEAVNSTR EQHCSWESRM 180
181 IKPVQRIVQY PLLLKNIADA LPKDARERVQ VEAALQKMQT SAEYVNEMQR LHEDYAQYME 240
241 TVRKANEPML AEKSLRLDTR ELLVFAHIKW RDAPAEHYVV FVFHSLILLL PSYARKEIKM 300
301 KWTRVLPINE VDINEMPNDA LNLKLYHAAF EGPNGQLSHS NPNTVYNIEC CQSQLKQHLI 360
361 KNIKKARTLF SRESHRPLSG SSQSDGGYVS EVSKEHRNSK
|
| Detection Method: | |
| Confidence: | 54.221849 |
| Match: | 2dfkA |
| Description: | No description for 2dfkA was found. |
