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View Structure Prediction Details

Protein: CE37715
Organism: Caenorhabditis elegans
Length: 559 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37715.

Description E-value Query
Range
Subject
Range
gi|187027336, gi... - gi|39586094|emb|CAE69170.1| Hypothetical protein CBG15202 [Caenorhabditis briggsae], gi|187027336|em...
gi|157776890 - gi|157776890|ref|XP_001666511.1| hypothetical protein CBG15202 [Caenorhabditis briggsae AF16]
678.0 [0..3] [556..1]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLTLALLV AGSLAYKFED CEQKPAALNQ VLRVGAKLYS YNLDFFYQKA LPYNAIYAFT  60
   61 DVFLQTNLTN ADQYQFYQGT NCTTVQQLYD NDNRYFGILR KAALLRSHQL NPFNDTIVGV 120
  121 STTEPYEISV LIWKVNYFRV GVYVGAIVLF LLASKLVR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVVFYYTSGC SFGLLASLLL VAFIVWRVAP KKTIGVPILI GGWSVSLYML HFAWSNLQSI  60
   61 MIEYQKYVIG YFATVLLISM AVC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [242-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKRGPPTDAR SHDIAQWTLQ LVALALIYFS VQMVEVSTGT IGALIIQQIC RGFLFAGIRW  60
   61 YFVGLKAVWR KFFPARRRLL NEEEYEEQAE KTTKEQLAQL REYCKKEGNR PWKIAGNVRS 120
  121 ARRLARFIEG EDDHITEDEI YAHELTGDVL DDEDYDFNED YGLRTPNESH FDLE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [416-559]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDEDGAEEWD EVVVRRRASE YGRDSVQSVR VPRSVSSRLL SPYQGQNHMN RSLGPGIGFR  60
   61 RDSTPRHGNF QSEHRPRMPR TEQIYRSRRV EYDVKNGRVE GPSSSTASGM TPSEYMRKAR 120
  121 RIDATSKTPT RKSRHPTESE DADE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle